Table 2.
The proportion of SSRs with different types
| Types | Repeat units |
Overall SSRs |
Unique SSRs |
Unique SSRs with polymorphisms |
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Count | Length (bp) | GC (%) | Rate (%) | Count | Length (bp) | GC (%) | Rate (%) | Count | Length (bp) | GC (%) | Rate (%) | ||
| Perfect SSRs |
MNRs |
72258 |
11.70 |
53.21 |
40.21 |
35998 |
11.79 |
39.78 |
43.53 |
20632 |
11.20 |
30.33 |
58.87 |
| |
DNRs |
53842 |
18.24 |
25.01 |
29.97 |
25510 |
20.38 |
22.49 |
30.85 |
9929 |
18.54 |
29.14 |
28.33 |
| |
TNRs |
36726 |
17.52 |
49.12 |
20.44 |
12702 |
17.83 |
53.36 |
15.36 |
2557 |
19.04 |
47.18 |
7.30 |
| |
TTRs |
2616 |
23.08 |
30.76 |
1.46 |
1784 |
23.45 |
34.81 |
2.16 |
685 |
24.05 |
31.43 |
1.95 |
| |
PNRs |
800 |
28.37 |
41.10 |
0.45 |
482 |
28.05 |
41.36 |
0.58 |
225 |
27.31 |
43.09 |
0.64 |
| |
HNRs |
449 |
32.54 |
51.24 |
0.25 |
199 |
32.38 |
57.14 |
0.24 |
101 |
31.96 |
56.41 |
0.29 |
| |
Totali |
166691 |
15.41 |
42.78 |
92.77 |
76675 |
16.08 |
34.92 |
92.72 |
34129 |
14.35 |
31.43 |
97.38 |
| Imperfect SSRs |
-- |
10841 |
91.66 |
47.45 |
6.03 |
4615 |
79.28 |
43.76 |
5.58 |
429 |
40.85 |
34.12 |
1.22 |
| Compound SSRs |
-- |
2149 |
43.48 |
33.44 |
1.20 |
1404 |
44.53 |
31.38 |
1.70 |
488 |
34.70 |
34.34 |
1.39 |
| Total | -- | 179681 | 20.34 | 42.39 | 100.00 | 82694 | 20.09 | 36.74 | 100.00 | 35046 | 13.96 | 34.38 | 100.0 |