Table 2. Number of highly upregulated or highly expressed transcripts in expanded Pfam domain families of M. haptotylum and A. oligospora during nematode infection.
| M. haptotylum | A. oligospora | ||||
| I/Ka | >10%b | M/Ac | >10%b | A/Md | |
| Peptidases | |||||
| Peptidase M10 | 1 | ||||
| Peptidase S8 | 2 | 4 | 2 | 5 | 3 |
| Aspartyl protease | 1 | 2 | 1 | ||
| Plant cell wall enzymes | |||||
| CBM_1 | 1 | 4 | 5 | 6 | |
| Glycoside hydrolase family 28 | 1 | ||||
| Glycoside hydrolase family 61 | 2 | 2 | |||
| Tyrosinase | 5 | 10 | 2 | 1 | |
| Pectinesterase | |||||
| Pectate lyase | 1 | 1 | |||
| Fungal virulence factors | |||||
| CFEM | 5 | 1 | 2 | ||
| DUF3129 (gas 1) | 14 | 17 | 1 | 2 | 1 |
| Phosphorylase superfamily | 1 | 3 | 10 | 3 | |
| Protein-protein interaction | |||||
| F-box domain | 10 | 3 | 5 | 4 | |
| Ankyrin repeat | 1 | 10 | 5 | 21 | 5 |
| BTB/POZ domain | 2 | 1 | 4 | ||
| Extracellular proteins | |||||
| WSC | 10 | 12 | 3 | ||
| GLEYA | 3 | 1 | 1 | 1 | |
| Mucin-like | 2 | 3 | |||
| Others | |||||
| Herpes_gE | 1 | 1 | 1 | ||
| NACHT domain | 5 | 4 | 18 | 4 | |
| SKG6 | 3 | 2 | 1 | ||
| Stig 1 | |||||
| SPRY | 2 | 3 | 1 | ||
| Ricin type lectin domain | 1 | 1 | 2 | ||
| NB-ARC domain | 1 | 1 | |||
| Total number of genes (Total in genome) | 36 (117) | 94 (1,069) | 33 (338) | 78 (1,145) | 40 (335) |
a
“I/K” indicates the number of genes upregulated >10 fold and found among the most highly (>10%) expressed genes (Figure 6B).
b
“>10%” indicates the number of genes found among the 10% most highly expressed genes on nematode infection.
c
“M/A” indicates the number of genes upregulated >10 fold in the pair-wise comparison between M. haptotylum and A. oligospora (Figure 7B).
d
“A/M” indicates the number of genes upregulated >10 fold in the pair-wise comparison between A. oligospora and M. haptotylum (Figure 7C).