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. 2013 Nov 9;13:250. doi: 10.1186/1471-2180-13-250

Table 2.

Oligonucleotides used for PCR amplification in this study

Primer name Sequence (5′-3′)
Primers for DNA fragment PCR to obtain a partial sequence of genomic DNA of the acid proteinase
12 ND-F
AACGATATCGAGTACTATGGT
M.cir-2R
TTAAAGACTTCATAGTTGTTCTT
Primer for 3′-RACE PCR (Gene-specific primer)
GSP-Mucor-1 F
GATGGTCGTGCCTGGTCTATCCAAT
Primer for 5′-RACE PCR (gene-specific primer)
GSP-Mucor-2R
CATTGTCTCTGGCACCGTATTGAGCAGC
Primers for full-length cDNA and recombinant plasmids
APMC-EcoNaeI-F
ATGGAATTCGCCGGCGCTACTACTGATGCCACTGGTACTGTCCCCG
APMC-F
AGGAATTCTTCTCATTAGTCTCTTCTTG
APMC-Met-F
ATGGAATTCATGAAATTCTCATTAGTCTCTTCTTGTGTC
MCAP-3 F
TATCTCGAGaaaagaGCTCCCAGTGGTAGCAAGAA
XhoI-N-MCAP-F
TATCTCGAGaaaagaATGAAATTCTCATTAGTCTCTTCTTGTG
APMC-NotI-R
AAAGCGGCCGCGACAGATTTGGCAATTT
APMC-Stop-R
GTGATTTATAGATAGATAGATGAAATGTACCAAA
Primers to identify clones containing recombinant plasmids
pGAP-F
GTCCCTATTTCAATCAATTGAACAAC
AOX1pGAP-Rev CAAATGGCATTCTGACATCCTC

The underlined sequences (GAATTC; EcoRI, CTCGAG; XhoI and GCGGCCGC; NotI) represent the additional restriction sites at the 5′ ends of forward and reverse primers. The lowercase letters indicate the Kex2 cleavage sites. The primers (for First-strand cDNA synthesis, 3′-RACE cDNA and 5′-RACE cDNA) provided in the SMART RACE cDNA Amplification Kit (Clontech) are not described in the table.