Table 3.
Distribution of clusters and hotspots over genome
| Chromosome | Cluster name | Approximate position on chromosome (cM) | # of QTL | Hotspot name | Approximate position on chromosome (cM) | # of QTL |
|---|---|---|---|---|---|---|
| c1 |
c1-cluster-1 |
14-34 |
9 |
c1-FL-Hotspot-1 |
66-86 |
5 |
| c1-cluster-2 |
58-82 |
10 |
|
|
|
|
| c1-cluster-3 |
95-126 |
7 |
|
|
|
|
| c2 |
c2-cluster-1 |
0-14 |
5 |
c2-FE-Hotspot-1 |
30-43 |
4 |
| c2-cluster-2 |
32-52 |
13 |
|
|
|
|
| c2-cluster-3 |
82-105 |
5 |
|
|
|
|
| c3 |
c3-cluster-1 |
0-20 |
15 |
c3-FL-Hotspot-2 |
0-20 |
7 |
| c3-cluster-2 |
23-48 |
23 |
c3-FL-Hotspot-3 |
43-55 |
5 |
|
| |
|
|
c3-Micronaire-Hotspot-1 |
23-43 |
5 |
|
| c4 |
c4-cluster-1 |
0-8 |
7 |
c4-FL-Hotspot-4 |
46-58 |
5 |
| c4-cluster-2 |
46-66 |
10 |
c4-Micronaire-Hotspot-2 |
34-55 |
4 |
|
| c5 |
c5-cluster-1 |
0-20 |
15 |
c5-Micronaire-Hotspot-3 |
0-20 |
5 |
| c5-cluster-2 |
22-42 |
16 |
c5-Nematode-Hotspot-1 |
27-47 |
6 |
|
| c5-cluster-3 |
59-79 |
5 |
|
|
|
|
| c5-cluster-4 |
84-104 |
14 |
|
|
|
|
| c6 |
c6-cluster-1 |
0-17 |
19 |
c6-color-Hotspot-1 |
8-17 |
6 |
| c6-cluster-2 |
24-37 |
6 |
c6-Micronaire-Hotspot-4 |
0-24 |
4 |
|
| c6-cluster-3 |
53-67 |
10 |
|
|
|
|
| c7 |
c7-cluster-1 |
0-25 |
32 |
c7-FL-Hotspot-5 |
0-18 |
4 |
| c7-cluster-2 |
43-59 |
9 |
c7-FS-Hotspot-1 |
0-27 |
5 |
|
| c7-cluster-3 |
72-91 |
5 |
c7-Nematode-Hotspot-2 |
0-22 |
9 |
|
| c8 |
c8-cluster-1 |
0-20 |
6 |
c8-color-Hotspot-2 |
20-39 |
7 |
| c8-cluster-2 |
25-39 |
9 |
|
|
|
|
| c8-cluster-3 |
107-144 |
5 |
|
|
|
|
| c9 |
c9-cluster-1 |
0-20 |
16 |
|
|
|
| c9-cluster-2 |
29-54 |
14 |
|
|
|
|
| c10 |
c10-cluster-1 |
0-20 |
13 |
c10-Micronaire-Hotspot-5 |
0-20 |
4 |
| c10-cluster-2 |
79-112 |
12 |
|
|
|
|
| c11 |
c11-cluster-1 |
0-20 |
26 |
c11-Nematode-Hotspot-3 |
0-20 |
14 |
| c12 |
c12-cluster-1 |
0-16 |
11 |
c12-FL-Hotspot-6 |
72-91 |
6 |
| c12-cluster-2 |
18-38 |
19 |
c12-FU-Hotspot-1 |
23-34 |
5 |
|
| c12-cluster-3 |
67-85 |
10 |
c12-Micronaire-Hotspot-6 |
0-16 |
4 |
|
| |
|
|
c12-Micronaire-Hotspot-7 |
23-34 |
4 |
|
| c13 |
c13-cluster-1 |
0-17 |
6 |
|
|
|
| c13-cluster-2 |
29-44 |
6 |
|
|
|
|
| c14 |
c14-cluster-1 |
0-20 |
30 |
c14-Micronaire-Hotspot-8 |
99-118 |
5 |
| c14-cluster-2 |
52-66 |
10 |
c-14-Nematode-Hotspot-4 |
0-15 |
8 |
|
| c14-cluster-3 |
82-91 |
7 |
|
|
|
|
| c14-cluster-4 |
99-122 |
16 |
|
|
|
|
| c15 |
c15-cluster-1 |
0-17 |
8 |
c15-FE-Hotspot-2 |
17-39 |
5 |
| c15-cluster-2 |
20-44 |
24 |
c15-Leaf-Hotspot-1 |
17-39 |
6 |
|
| c15-cluster-3 |
60-68 |
10 |
c15-Microanaire-Hotspot-9 |
23-49 |
10 |
|
| c16 |
c16-cluster-1 |
0-23 |
28 |
c16-Micronaire-Hotspot-10 |
0-23 |
8 |
| c16-cluster-2 |
30-40 |
9 |
c16-VW-Hotspot-1 |
0-23 |
5 |
|
| c16-cluster-3 |
50-70 |
16 |
c16-VW-Hotspot-2 |
30-50 |
7 |
|
| |
|
|
c16-VW-Hotspot-3 |
51-64 |
4 |
|
| c17 |
c17-cluster-1 |
5-23 |
12 |
c17-FU-Hotspot-2 |
63-78 |
4 |
| c17-cluster-2 |
53-78 |
13 |
c17-Micronaire-Hotspot-11 |
11-27 |
5 |
|
| c18 |
c18-cluster-1 |
0-19 |
15 |
c18-Micronaire-Hotspot-12 |
28-43 |
5 |
| c18-cluster-2 |
28-43 |
9 |
|
|
|
|
| c18-cluster-3 |
53-65 |
7 |
|
|
|
|
| c18-cluster-4 |
76-93 |
8 |
|
|
|
|
| c19 |
c19-cluster-1 |
0-20 |
14 |
c19-FE-Hotspot-3 |
124-144 |
4 |
| c19-cluster-2 |
32-52 |
14 |
c19-Micronaire-Hotspot-13 |
0-25 |
4 |
|
| c19-cluster-3 |
62-82 |
5 |
|
|
|
|
| c19-cluster-4 |
97-117 |
5 |
|
|
|
|
| c19-cluster-5 |
124-144 |
12 |
|
|
|
|
| c20 |
c20-cluster-1 |
0-20 |
7 |
|
|
|
| c20-cluster-2 |
25-45 |
13 |
|
|
|
|
| c20-cluster-3 |
117-137 |
5 |
|
|
|
|
| c21 |
c21-cluster-1 |
12-32 |
6 |
c21-Micronaire-Hotspot-14 |
60-81 |
4 |
| c21-cluster-2 |
48-64 |
12 |
|
|
|
|
| c21-cluster-3 |
70-87 |
8 |
|
|
|
|
| c21-cluster 4 |
96-104 |
5 |
|
|
|
|
| c22 |
c22-cluster-1 |
0-22 |
19 |
|
|
|
| c23 |
c23-cluster-1 |
0-22 |
26 |
c23-FE-Hotspot-4 |
0-22 |
4 |
| c23-cluster-2 |
25-35 |
10 |
c23-FS-Hotspot-2 |
77-85 |
6 |
|
| c23-cluster-3 |
40-70 |
10 |
c23-VW-Hotspot-4 |
0-21 |
13 |
|
| c23-cluster-4 |
76-87 |
11 |
c23-VW-Hotspot-5 |
26-46 |
9 |
|
| c23-cluster-5 |
102-119 |
7 |
|
|
|
|
| c24 |
c24-cluster-1 |
0-17 |
13 |
c24-FS-Hotspot-3 |
31-51 |
16 |
| c24-cluster-2 |
17-19 |
6 |
c24-Micronaire-Hotspot-15 |
0-19 |
4 |
|
| c24-cluster-3 |
35-45 |
17 |
c24-Micronaire-Hotspot-16 |
29-35 |
4 |
|
| c24-cluster-4 |
56-66 |
5 |
c24-Micronaire-Hotspot-17 |
92-110 |
4 |
|
| c25 |
c25-cluster-1 |
0-21 |
21 |
c25-color-Hotspot-3 |
21-40 |
4 |
| c25-cluster-2 |
40-62 |
13 |
c25-color-Hotspot-4 |
55-75 |
7 |
|
| c25-cluster-3 |
73-89 |
17 |
c25-Micronaire-Hotspot-18 |
0-21 |
10 |
|
| |
|
|
c25-Micronaire-Hotspot-19 |
33-65 |
4 |
|
| c26 | c26-cluster-1 |
0-22 |
14 |
c26-FL-Hotspot-7 |
0-22 |
4 |
| c26-cluster-2 |
33-51 |
19 |
c26-FL-Hotspot-8 |
45-65 |
6 |
|
| c26-Micronaire-Hotspot-20 | 28-45 | 6 |
QTL cluster and hotspot locations on the genome are described in the table below. Locations are given in cM regions which are seen graphically in Figure 1.