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. Author manuscript; available in PMC: 2014 Sep 3.
Published in final edited form as: Biochemistry. 2013 Aug 21;52(35):10.1021/bi400683y. doi: 10.1021/bi400683y

Table 2.

Comparison of predicted and observed proline m-values for protein unfolding and µ23 values for interaction of proline with native BSA surface

Protein
Process
Proline GB Urea

Experi-
mental
α-value
prediction
GTFE
prediction
37
Experi-
mental
α-value
prediction
GTFE
Predict-
ion 37
Experi-
mental
α-value
predict-
ion
GTFE
Predict-
ion 37
Ribonuclease
T1 unfolding
m-value (kcal
mol−1 M−1)
0.8±0.1
22
1.1±0.5a −0.03±0.6 0.6±0.1
22
0.7±1.1a −0.2±0.7 −1.2±0.1
22
−2.0±0.2a −1.2±0.6
α-chymo-
trypsin
unfolding
m-value (kcal
mol−1 M−1)
6.0±0.436 4.3±1.4a 1.8±2.2 5.6±0.336 3.9±3.1a 1.4±3.1 3.0±0.436 −4.5±0.5a −4.4±2.0
Native BSA
µ23 value
(kcal mol−1
m−1)
11.9±0.3 7.7±2.0b −6.6d 21.717 10.8±3.3b −12.1d −4.517 −3.6±0.8b −2.3d
a

α-value predictions use an extended model of the unfolded state (see text)

b

α-value predictions use ASA calculated from PDB 1BM018 and neglect interactions of the solute with the Na+ ions of the electroneutral BSA component.

c

Calculated as the initial slope of a quadratic fit of ∆Gobs vs urea molarity.36

d

GTFE predictions use side chain and backbone values from ref 22 and ASA calculated from PDB 1BM018; these predictions implicitly include counterions of charged amino acid side chains.37