Table 2.
Comparison of predicted and observed proline m-values for protein unfolding and µ23 values for interaction of proline with native BSA surface
Protein Process |
Proline | GB | Urea | ||||||
---|---|---|---|---|---|---|---|---|---|
Experi- mental |
α-value prediction |
GTFE prediction 37 |
Experi- mental |
α-value prediction |
GTFE Predict- ion 37 |
Experi- mental |
α-value predict- ion |
GTFE Predict- ion 37 |
|
Ribonuclease T1 unfolding m-value (kcal mol−1 M−1) |
0.8±0.1 22 |
1.1±0.5a | −0.03±0.6 | 0.6±0.1 22 |
0.7±1.1a | −0.2±0.7 | −1.2±0.1 22 |
−2.0±0.2a | −1.2±0.6 |
α-chymo- trypsin unfolding m-value (kcal mol−1 M−1) |
6.0±0.436 | 4.3±1.4a | 1.8±2.2 | 5.6±0.336 | 3.9±3.1a | 1.4±3.1 | 3.0±0.436 | −4.5±0.5a | −4.4±2.0 |
Native BSA µ23 value (kcal mol−1 m−1) |
11.9±0.3 | 7.7±2.0b | −6.6d | 21.717 | 10.8±3.3b | −12.1d | −4.517 | −3.6±0.8b | −2.3d |
α-value predictions use an extended model of the unfolded state (see text)
α-value predictions use ASA calculated from PDB 1BM018 and neglect interactions of the solute with the Na+ ions of the electroneutral BSA component.
Calculated as the initial slope of a quadratic fit of ∆Gobs vs urea molarity.36