. 2013 Oct 23;2013:298920. doi: 10.1155/2013/298920

Table 4.

Some selected differentially expressed genes identified using Solexa sequencing in sugarcane.

Gene	log⁡₂ ^Ratio	P Value	FDR	Annotation
gi\|35266134	10.6	4.44E ⁻¹⁶	2.90E ⁻¹⁴	Zea mays STIP1 and U box protein 1
gi\|35111854	9.2	1.67E ⁻⁰⁹	4.70E ⁻⁰⁸	Sorghum bicolor hypothetical protein
gi\|34977253	9.0	1.35E ⁻⁰⁸	3.42E ⁻⁰⁷	Saccharum SP-80-3280 chloroplast
gi\|35208604	8.8	1.09E ⁻⁰⁷	2.43E ⁻⁰⁶	S. bicolor hypothetical protein
gi\|35293529	8.8	1.09E ⁻⁰⁷	2.43E ⁻⁰⁶	S. bicolor hypothetical protein
gi\|26879857	8.8	2.19E ⁻⁰⁷	4.62E ⁻⁰⁶	Mus musculus chromosome 1
gi\|34921564	8.6	8.82E ⁻⁰⁷	1.69E ⁻⁰⁵	S. bicolor hypothetical protein
gi\|34942866	8.6	8.82E ⁻⁰⁷	1.69E ⁻⁰⁵	S. bicolor ATP synthase complex subunit 9
gi\|34967006	8.5	3.55E ⁻⁰⁶	5.99E ⁻⁰⁵	Z. ays transcription factor GT-3b
gi\|36001135	8.5	3.55E ⁻⁰⁶	5.99E ⁻⁰⁵	Z. mays omega-3 fatty acid desaturase
gi\|35094785	8.4	7.14E ⁻⁰⁶	0.000113	S. bicolor hypothetical protein
gi\|35229762	8.4	7.14E ⁻⁰⁶	0.000113	Z. mays nucleotide adenylyltransferase 1
gi\|35294230	8.4	7.14E ⁻⁰⁶	0.000113	Z. mays clone 294529 ATEB1A mRNA
gi\|35981936	8.3	1.43E ⁻⁰⁵	0.000214	Z. mays dihydrolipoamide S-acetyltransferase 1
gi\|34965850	8.3	1.43E ⁻⁰⁵	0.000214	Z. mays h/ACA ribonucleoprotein mRNA
gi\|34942070	8.3	1.43E ⁻⁰⁵	0.000214	S. bicolor mitochondrion
gi\|35052194	8.3	1.43E ⁻⁰⁵	0.000214	S. officinarum receptor kinase 1 (BAK1)
gi\|35275212	8.3	1.43E ⁻⁰⁵	0.000214	S. bicolor hypothetical protein
gi\|34917382	8.2	2.88E ⁻⁰⁵	0.000401	S. bicolor hypothetical protein
gi\|34973370	8.2	2.88E ⁻⁰⁵	0.000401	Z. mays myb-like protein mRNA
gi\|34942843	8.2	2.88E ⁻⁰⁵	0.000402	S. bicolor hypothetical protein
gi\|35074510	8.1	5.77E ⁻⁰⁵	0.000741	No match
gi\|35090069	8.1	5.77E ⁻⁰⁵	0.000741	Saccharum NCo 310 chloroplast DNA
gi\|34977027	8.1	5.77E ⁻⁰⁵	0.000741	S. bicolor mitochondrion
gi\|35203085	8.1	5.77E ⁻⁰⁵	0.000741	S. bicolor hypothetical protein
gi\|35942526	8.1	5.77E ⁻⁰⁵	0.000741	S. bicolor hypothetical protein
gi\|35278085	8.1	5.77E ⁻⁰⁵	0.000741	S. bicolor hypothetical protein
gi\|35006270	8.1	5.77E ⁻⁰⁵	0.000739	Z. mays GAPDH mRNA, partial cds
gi\|35265314	8.1	5.77E ⁻⁰⁵	0.000739	No match
gi\|34957782	8.1	5.77E ⁻⁰⁵	0.000739	S. bicolor hypothetical protein
gi\|34964700	5.8	1.65E ⁻⁰⁵	0.000243	S. bicolor hypothetical protein
gi\|35245148	1.7	7.75E ⁻⁰⁷	1.50E ⁻⁰⁵	NSP-interacting kinase 1
gi\|36032703	3.3	1.21E ⁻⁰⁸	3.11E ⁻⁰⁷	MKK6-putative MAPKK mRNA
gi\|33461608	2.2	2.22E ⁻⁰⁶	3.89E ⁻⁰⁵	No match
gi\|36001222	−16.2	0	0	Kladothrips maslini 16S ribosomal RNA
gi\|35990824	−11.2	5.91E ⁻³⁷	6.64E ⁻³⁵	Manduca sexta actin mRNA, complete cds
gi\|33461608	−10.3	2.74E ⁻¹⁹	2.03E ⁻¹⁷	No match
gi\|36014330	−10.2	2.17E ⁻¹⁸	1.54E ⁻¹⁶	Z. mays subtilisin-chymotrypsin inhibitor,
gi\|34922345	−9.5	1.67E ⁻¹¹	6.06E ⁻¹⁰	Z. perennis isolate per7a MPI gene
gi\|34971519	−9.3	2.63E ⁻¹⁰	8.38E ⁻⁰⁹	S. bicolor hypothetical protein
gi\|35975174	−8.5	4.09E ⁻⁰⁶	6.81E ⁻⁰⁵	Z. mays subtilisin-chymotrypsin inhibitor
gi\|35056509	−8.3	1.63E ⁻⁰⁵	0.000240497	S. bicolor hypothetical protein
gi\|35008679	−8.1	6.45E ⁻⁰⁵	0.000819694	Z. mays clone 261727 mRNA sequence
gi\|35998230	−8.1	2.16E ⁻⁸⁵	4.06E ⁻⁸³	Z. mays subtilisin-chymotrypsin inhibitor
gi\|36040747	−7.3	3.31E ⁻⁴⁸	4.57E ⁻⁴⁶	No match
gi\|31072203	−6.5	6.96E ⁻⁵²	1.02E ⁻⁴⁹	No match
gi\|35989329	−5.7	1.29E ⁻⁵⁸	2.02E ⁻⁵⁶	Z. mays adhesive/proline-rich protein
gi\|35013208	−5.4	5.53E ⁻³⁷	6.23E ⁻³⁵	S. bicolor hypothetical protein
gi\|36034301	−5.2	7.59E ⁻¹⁴	1.65E ⁻¹⁴¹	Z. mays xylanase inhibitor protein
gi\|36008557	−5.1	1.67E ⁻¹⁰	5.41E ⁻⁰⁹	S. officinarum clone SCQGLR1019F04
gi\|34929144	−5.0	5.60E ⁻⁵²	8.24E ⁻⁵⁰	U-box domain-containing protein 21