Table 2. Family-based TDT analysis.
Transmitted/ | P-value | ||||||||
---|---|---|---|---|---|---|---|---|---|
Gene |
SNP |
Reference SNP no. |
n1 |
n2 |
Not-transmitted |
Observed |
Correcteda |
OR |
95% CI |
ABCB1 | e12/C1236T | rs1128503 | 150 | 108 | T: 92/45 C: 45/92 | 5.1 × 10-5 | 4.6 × 10−4 | 2.04 | 1.45–2.99 |
e21/G2677T e21/G2677A | rs2032582 | 150 | 111 | G: 78/91 T: 96/64 A: 23/42 | 0.008 | 0.072 | 1.50b | 1.08–2.09 | |
e26/C3435T | rs1045642 | 150 | 110 | C: 56/87 T: 87/56 | 0.009 | 0.081 | 1.55 | 1.10–2.21 | |
ABCC1 | 5'FR/G-260C | rs504348 | 150 | 7 | G: 03/04 C: 04/03 | 0.705 | − | 1.33 | 0.23–9.10 |
ABCC2 | e1/C-24T | rs717620 | 150 | 76 | C: 41/50 T: 50/41 | 0.345 | − | 1.24 | 0.811.93 |
e10/G1249A | rs2273697 | 150 | 53 | G: 34/22 A: 22/34 | 0.107 | − | 1.55 | 0.88–2.77 | |
e5/C421A | rs2231142 | 150 | 110 | C: 70/62 A: 62/70 | 0.486 | − | 1.13 | 0.79–1.62 | |
ABCG2 | e2/G34A | rs2231137 | 150 | 105 | G: 54/71 A: 71/54 | 0.127 | − | 1.32 | 0.91–1.91 |
I9/T-357C | rs2054576 | 150 | 91 | T: 59/51 C: 51/59 | 0.445 | − | 1.16 | 0.78–1.72 |
Abbreviations: CI, confidence Interval; OR, odds ratio; n1, number of family samples which were successfully genotyped; n2, number families with at least one heterozygote parent.
P-value of <0.01 are highlighted in bold.
After adjustment for multiple comparisons (N=9).
OR for T-allele.