Table 2. BRCA1 and BRCA2 markers, primers and labels for universal PGD tests.
Protocol | Marker | Primer sequence (5′→3′) | Tag | Size (bp) |
---|---|---|---|---|
BRCA1 (six markers) | ||||
D17S932 | Fw—ACACGGATGGCCTTTTAGAAAGTGGTC Rev—AACACACAGACTTGTCCTACTGCCAT | VIC | 145–157 | |
D17S1814 | Fw—ATGCTCCCCAATGACGGTGATG Rev—AGCTGGAGGTTGGCTTGTGGAT | NED | 150–166 | |
D17S950 | Fw—CATACACAGCACTTGCCCCCATGT Rev—ACAACAGCACAACGCCCTGCAC | FAM | 169–187 | |
D17S1787 | Fw—TGCAAGACCCTTCACGCTTTGTC Rev—CTTGGTGGTTCCCTTCGTCCTTG | NED | 186–198 | |
BRCA1_dist24AC | Fw—TGCAGAACAATTGTAGCAGCACACAG Rev—GTGGTCAGAACAATGCAAATTGAAGC | VIC | 205–235 | |
D17S800 | Fw—ACATCACCCAGGGAGGTGAGTTC Rev—AAGTGGGAGGAGCCATGAATGA | NED | 266–276 | |
BRCA2 (eight markers) | ||||
D13S1695 | Fw—TGTTCTAATGCCTGGGTATCATCC Rev—CAGGTGATCTGAGACTCAATAGCTTAACA | VIC | 98–122 | |
D13S267 | Fw—TCCTCCCCATCCACCTTTCTCC Rev—CAGGTCCCACCATAAGCACAAGC | FAM | 133–147 | |
D13S171 | Fw—AAGGGAAGGAGAAAGGGGAGGTG Rev—GCATTGACCTTAGGGCCATCCA | NED | 150–166 | |
D13S289 | Fw—GGTTGAGCGGCATTGAAAACAG Rev—CACCTTCATCACCACCTTGATATGG | FAM | 163–177 | |
BRCA2_dist18AC | Fw—GCCGCCTTTCACGTAAGCACAG Rev—AATGGGAACCCAATTCAGCAAGG | PET | 180–210 | |
D13S260 | Fw—GGATCTGCTTGCAATGCCCAAA Rev—TCTCCCAGATATAAGGACCTGGCTATG | VIC | 210–224 | |
D13S1698 | Fw—TGGGATTACAGGCTTGAGCCACA Rev—TCTGACACAGCTGGTTTGTCTATTCACC | FAM | 215–235 | |
BRCA2STR19 | Fw—GAATTTGTGTTCCAGGTGAGAATTGC Rev—ATGGGGTGCCTATGGCCTGAA | NED | 235–259 |
Fw=forward, Rev=reverse, Tag=fluorescent dyes tagged to 5′ end of forward primers.