Table 1.
Sequenced strains and available genomes used in this study
| Strain | Sero type | MLST types | NCBI accession NO. | Status | Size (bp) | GC% | Protein | Isolate host | Origin |
|---|---|---|---|---|---|---|---|---|---|
|
S. agalactiae GD201008-001 |
Ia |
ST-7 |
NC_018646 |
Complete |
2,063,112 |
35.6 |
1,964 |
Fish |
China |
|
S. agalactiae SA20-06 |
Ib |
ST-553 |
NC_019048 |
Complete |
1,820,886 |
35.6 |
1,710 |
Fish |
Brazil |
|
S. agalactiae ZQ0910 |
Ia |
ST-7 |
NZ_AKAP00000000 |
Scaffolds |
2,008,809 |
35.4 |
1,970 |
Fish |
China |
|
S. agalactiae STIR-CD-17 |
Ib |
ST-260 |
NZ_ALXB00000000 |
Scaffolds |
1,805,303 |
35 |
1,698 |
Fish |
Honduras |
|
S. agalactiae A909 |
Ia |
ST-7 |
NC_007432 |
Complete |
2,127,839 |
35.6 |
1,996 |
Human |
USA |
|
S. agalactiae NEM316 |
III |
ST-23 |
NC_004368 |
Complete |
2,211,485 |
35.6 |
2,094 |
Human |
France |
|
S. agalactiae 2603 V/R |
V |
ST-110 |
NC_004116 |
Complete |
2,160,267 |
35.6 |
2,124 |
Human |
USA |
|
S. agalactiae 18RS21 |
II |
ST-19 |
NZ_AAJO00000000 |
Scaffolds |
2,192,158 |
36.9 |
2,146 |
Human |
USA |
|
S. agalactiae 515 |
Ia |
ST-23 |
NZ_AAJP00000000 |
Scaffolds |
2,088,029 |
35.3 |
2,275 |
Human |
USA |
|
S. agalactiae CJB111 |
V |
ST-1 |
NZ_AAJQ00000000 |
Scaffolds |
2,104,864 |
35.6 |
2,197 |
Human |
USA |
|
S. agalactiae COH1 |
III |
ST-17 |
NZ_AAJR00000000 |
Scaffolds |
2,204,946 |
35.5 |
2,376 |
Human |
USA |
|
S. agalactiae GB00112 |
III |
ST-17 |
NZ_AKXO00000000 |
Scaffolds |
2,033,051 |
35.2 |
1,952 |
Human |
Canada |
|
S. agalactiae H36B |
Ib |
ST-6 |
NZ_AAJS00000000 |
Scaffolds |
2,200,617 |
35.6 |
2,376 |
Human |
USA |
|
S. agalactiae ATCC 13813 |
II |
ST-337 |
NZ_AEQQ00000000 |
Scaffolds |
2,114,958 |
35.2 |
2,211 |
Bovine |
UK |
| S. agalactiae FSL S3-026 | III | ST-67 | NZ_AEXT00000000 | Scaffolds | 2,455,848 | 36.1 | 2,334 | Bovine | USA |