1. |
CPHModels3.0 |
http://www.cbs.dtu.dk/services/CPHmodels/
|
Protein homology modeling server |
2. |
SWISS-MODEL |
http://swissmodel.expasy.org/SWISS-MODEL.html
|
A fully automated protein structure homology-modeling server |
3. |
Modeller |
http://salilab.org/modeller/
|
Program for protein structure modeling by satisfaction of spatial
restraints |
5. |
3D-JIGSAW |
http://3djigsaw.com/
|
Server to build three-dimensional models for proteins based on
homologues of known structure |
6. |
PSIPRED |
http://bioinf.cs.ucl.ac.uk/psipred/
|
A combination of methods such as sequence alignment with structure
based scoring functions and neural network based jury system to
calculate final score for the alignment |
7. |
3D-PSSM |
http://www.sbg.bio.ic.ac.uk/~3dpssm/index2.html
|
Threading approach using 1D and 3D profiles coupled with secondary
structure and solvation potential |
8. |
ROBETTA |
http://robetta.bakerlab.org
|
De novo Automated structure prediction analysis tool used to
infer protein structural information from protein sequence data |
9. |
PROTINFO |
http://protinfo.compbio.washington.edu/
|
De novo protein structure prediction web server utilizing
simulated annealing for generation and different scoring functions
for selection of final five conformers |
10. |
SCRATCH |
http://scratch.proteomics.ics.uci.edu/
|
Protein structure and structural features prediction server which
utilizes recursive neural networks, evolutionary information,
fragment libraries and energy |
11. |
I-TASSER |
http://zhanglab.ccmb.med.umich.edu/I-TASSER/
|
Predicts protein 3D structures based on threading approach |
12. |
BHAGEERATH |
http://www.scfbio-iitd.res.in/bhageerath/index.jsp
|
Energy based methodology for narrowing down the search space of
small globular proteins |
13. |
BHAGEERATH-H |
http://www.scfbio-iitd.res.in/bhageerath/bhageerath_h.jsp
|
A Homology ab-initio Hybrid Web server for Protein Tertiary
Structure Prediction |