. Author manuscript; available in PMC: 2013 Nov 18.

Published in final edited form as: Psychiatr Genet. 2010 Oct;20(5):10.1097/YPG.0b013e32833a2106. doi: 10.1097/YPG.0b013e32833a2106

Table 4.

Sets of three or more variants within 100,000 nucleotides of each other that are in the top 500 most significant variant list

Variant	Allele frequency (A)		Absolute difference in allele frequency	P	Experiment- wise P	Rank of P	Distance to next variant (nucleotides)	Location
	Control	Case	Absolute difference in allele frequency		Experiment- wise P	Rank of P	Distance to next variant (nucleotides)
A. Caucasian
RIMS2: Regulating synaptic membrane exocytosis protein 2 (chromosome 8q22.3)
rs2511571	0.59	0.66	0.07	0.0007	1	146	2,031	intron
rs2511576	0.63	0.71	0.08	0.0007	1	178	12,304	intron
rs1156813	0.33	0.26	0.07	0.0003	0.98	34		intron
B. African American i.
*i. CMYA3: cardiomyopathy associated 3 (chromosome 2q24.3)*
rs1429931	0.73	0.79	0.07	0.0238	1	364	428	intron
rs6706115	0.67	0.74	0.08	0.0079	1	136	2,913	intron
rs10497320	0.20	0.17	0.03	0.0079	1			intron
ii. No gene within 100,000 nucleotides (chromosome 13q13.1)
rs1937387	0.63	0.54	0.09	0.0079	1	157	3,132
rs2876780	0.77	0.66	0.11	0.0079	1	155	5,877
rs9318868	0.73	0.63	0.10	0.0079	1