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. Author manuscript; available in PMC: 2013 Nov 18.
Published in final edited form as: Proteomics. 2012 Apr;12(8):10.1002/pmic.201100515. doi: 10.1002/pmic.201100515

Figure 1. Overview of the PASSEL process.

Figure 1

SRM experimental results submitted by the community are stored in a raw data repository that is accessible via a web user interface. These data are also processed through a software pipeline which extracts trace groups from the raw data and assigns various quality metrics using mQuest; the results of this processing are stored in a database which is also browsable via a web interface. The highest quality transitions serve as one of several sources for the SRMAtlas whole-proteome catalogs of best available peptides and transitions.