Table 3.

Consistency Between RH V3.4, SHRSP × BN, and the Rat Genome Assembly R3.1 (RGSPC)

Chromosome	# STSs on RH and genetic map	# Discrepant chromosome designation	% Consistent chromosome designation	# STS in RH and genome assembly	# Discrepant chromosome designation	% Consistent chromosome designation	# Binned STSs and RH and genome map	# Discrepant chromosome position	% Consistent chromosome position
1	544	8	98.5%	2547	88	96.5%	2163	213	90.15%
2	425	20	95.3%	1639	61	96.3%	1387	99	92.86%
3	331	3	99.1%	1371	33	97.6%	1086	37	96.59%
4	353	10	97.2%	1412	84	94.1%	1241	113	90.89%
5	343	15	95.6%	1552	70	95.5%	1282	135	89.47%
6	300	4	98.7%	1088	26	97.6%	1098	58	94.72%
7	302	3	99.0%	1360	63	95.4%	1144	68	94.06%
8	352	15	95.7%	1346	35	97.4%	1063	33	96.90%
9	193	4	97.9%	744	36	95.2%	474	28	94.09%
10	224	0	100.0%	995	22	97.8%	876	32	96.35%
11	144	4	97.2%	590	15	97.5%	490	28	94.29%
12	169	2	98.8%	647	15	97.7%	503	24	95.23%
13	175	5	97.1%	690	10	98.6%	619	12	98.06%
14	136	1	99.3%	568	17	97.0%	480	21	95.63%
15	155	1	99.4%	595	22	96.3%	492	77	84.35%
16	165	6	96.4%	720	18	97.5%	586	24	95.90%
17	224	3	98.7%	745	15	98.0%	709	25	96.47%
18	167	5	97.0%	636	23	96.4%	505	23	95.45%
19	121	2	98.3%	512	16	96.9%	394	17	95.69%
20	76	3	96.1%	489	7	98.6%	265	4	98.49%
X	113	2	98.2%	244	9	96.3%	205	9	95.61%
Total	5012	116		20490	685		17062	1080	-
Average			97.8%	-	-	96.9%	-	-	94.34%