Table 2. Expression of unigenes in isoprenoid biosynthesis pathways.
| Pathway | Gene name | Unigene | Reads in leaf | Reads in root |
|---|---|---|---|---|
| MVA | AACT 1 | isotig00545 | 4 | 54 |
| AACT 2 | isotig22400 | 0 | 2 | |
| isotig27922 | 3 | 0 | ||
| HMGS | isotig01307 | 23 | 49 | |
| HMGR 1 | isotig04635 | 7 | 18 | |
| HMGR 2 | isotig01508 | 2 | 43 | |
| HMGR 3 | isotig03994 | 22 | 147 | |
| isotig07175 | 14 | 126 | ||
| gen_HITXW8201CK83K | 0 | 1 | ||
| gen_HITXW8201BFCSU | 0 | 1 | ||
| HMGR 4 | isotig07145 | 31 | 484 | |
| MVK | isotig10296 | 11 | 4 | |
| PMK | isotig21613 | 0 | 2 | |
| gen_HITXW8201A60UW | 0 | 1 | ||
| PMD | isotig02363 | 0 | 27 | |
| IPPI 1 | isotig01015 | 21 | 146 | |
| IPPI 2 | isotig34210 | 2 | 0 | |
| MEP | DXS 1 | isotig00083 | 1171 | 1 |
| DXS 2 | isotig11491 | 0 | 26 | |
| isotig10422 | 0 | 11 | ||
| DXS 3 | isotig28922 | 2 | 1 | |
| isotig11378 | 4 | 14 | ||
| DXS 4 | isotig00662 | 7 | 5 | |
| isotig29585 | 4 | 0 | ||
| DXS 5 | — | |||
| DXR | isotig06138 | 31 | 3 | |
| isotig09197 | 13 | 1 | ||
| MCT | isotig01252 | 11 | 16 | |
| ye_HN6LTMS01DEI5U | 1 | 0 | ||
| CMK | isotig00089 | 36 | 50 | |
| MDS | isotig11395 | 7 | 4 | |
| HDS | isotig00067 | 98 | 128 | |
| HDR 1 | isotig03934 | 5 | 13 | |
| gen_HITXW8201BTHGM | 0 | 1 | ||
| gen_HITXW8201EN94F | 0 | 1 | ||
| HDR 2 | isotig04251 | 89 | 0 | |
| isotig11365 | 17 | 0 | ||
| isotig01210 | 106 | 0 | ||
| Monoterpene | GPPS LSU | isotig05039 | 2 | 69 |
| isotig20070 | 0 | 3 | ||
| gen_HITXW8201D6C8K | 0 | 1 | ||
| GPPS SSUII 1 | gen_HITXW8201DT9BE | 0 | 1 | |
| GPPS SSUII 2 | isotig10575 | 44 | 44 | |
| isotig10082 | 232 | 72 | ||
| isotig27077 | 6 | 0 | ||
| Sesquiterpene | FPPS | isotig00761 | 26 | 65 |
| Diterpene | GGPPS 1 | isotig04334 | 95 | 324 |
| GGPPS 2 | isotig22076 | 0 | 2 | |
| GGPPS 3 | isotig10232 | 19 | 468 |
MVA, mevalonate pathway; AACT, acetyl-CoA acetyltransferase; HMGS, 3-hydroxy-3-methylglutaryl-CoA synthase; HMGR, 3-hydroxy-3-methylglutaryl-CoA reductase; MVK, mevalonate kinase; PMK, 5-phosphomevalonate kinase; PMD, 5-diphosphomevalonate decarboxylase; IPPI, Isopentenyl diphosphate isomerase; MEP, Enzymes of 2-C-methyl-D-erythritol 4-phosphate pathway; DXS, 1-deoxy-D-xylulose-5-phosphate synthase; DXR, 1-deoxy-D-xylulose-5-phosphate reductoisomerase; MCT, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; CMK, 4-diphosphocytidyl-2-Cmethyl-D-erythritol kinase; MDS, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; HDS, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase; HDR, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; GPPS, geranyl diphosphate synthase; FPPS, farnesyl diphosphate synthase; GGPPS, geranylgeranyl diphosphate synthase.