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. 2013 Nov 19;8(11):e81004. doi: 10.1371/journal.pone.0081004

Table 2. List of the most changed canonical pathways (IPA p-value <0.01).

Ingenuity Canonical Pathways p-value MK801 (n=29) p-value GK11 (n=6) Genes affected after MK801 treatment Genes affected after GK11 treatment
Inhibition of Angiogenesis by TSP1 3,0E-06 NS CD47, JUN, GUCY1A3, CD36, AKT3, NOS3 JUN, CD36
Corticotropin Releasing Hormone Signaling 1,5E-05 NS JUN, GUCY1A3, BDNF, CRH, NR4A1, PTGS2, ADCY8, NOS3, NPR2 JUN, BDNF, UCN, CRH
cAMP-mediated Signaling 2,0E-05 NS RGS2, CREM, CAMK2D, DUSP1, GRM3, PTH1R, S1PR1, P2RY12, HTR5B, STAT3, ADCY8, PDE1C CREM, GRM8, OPRK1, GABBR1, CHRM3
RAR Activation 3,4E-04 NS JUN, IL3RA, DUSP1, TGFB3, AKT3, ADCY8, SMAD1, CITED2, PPARGC1A JUN, IL3RA, SMAD1
Acute Phase Response Signaling 4,2E-04 NS FN1, JUN, ITIH4, IL6R, AKT3, CP, STAT3, CEBPB, TNFRSF11B JUN, C3, ITIH4, TNFRSF11B
Relaxin Signaling 4,2E-04 NS JUN, GUCY1A3, RLN1, AKT3, ADCY8, NOS3, NPR2, PDE1C -
Synaptic Long Term Depression 0,001 NS GUCY1A3, GRM3, PLA2G10, CRH, LYN, ADCY8, NOS3, NPR2 GRM8, CRH, LYN
ILK Signaling 0,001 NS FN1, JUN, PPAP2B, AKT3, ACTG2 (includes EG:72), PTGS2, CCND1, IRS3, ITGB7 -
IL-6 Signaling 0,001 0,008 ABCB1, JUN, IL6R, STAT3, CEBPB, TNFRSF11B ABCB1, JUN, HSPB1, TNFRSF11B
Role of Macrophages, Fibroblasts and Endothelial Cells in Rheumatoid Arthritis 0,002 NS FN1, JUN, WIF1, CAMK2D, LTA, CEBPD, IL6R, AKT3, STAT3, CEBPB, CCND1, TNFRSF11B JUN, TNFRSF11B, RYK
GM-CSF Signaling 0,002 NS CAMK2D, LYN, AKT3, STAT3, CCND1 LYN
PI3K Signaling in B Lymphocytes 0,002 0,005 JUN, CAMK2D, SYK, LYN, AKT3, VAV1, IRS3 JUN, C3, SYK, LYN, VAV1
HIF1α Signaling 0,003 NS JUN, SLC2A1, AKT3, MMP24, NOS3, SLC2A3 JUN, SLC2A3
B Cell Receptor Signaling 0,003 NS JUN, CAMK2D, SYK, EGR1, LYN, AKT3, VAV1 JUN, SYK, LYN, VAV1
G-Protein Coupled Receptor Signaling 0,003 NS RGS2, GRM3, GHRHR, HTR5B, STAT3, CELSR2, PDE1C, HCRTR2, CAMK2D, DUSP1, PTH1R, S1PR1, P2RY12, AKT3, ADCY8 GRM8, OPRK1, GABBR1, GPR88, CHRM3, CELSR2, HCRTR2
LXR/RXR Activation 0,003 NS APOC1, CD36, ACACA, PTGS2, TNFRSF11B APOC1, CD36, TNFRSF11B
LPS/IL-1 Mediated Inhibition of RXR Function 0,005 0,001 APOC1, ABCB1, JUN, CYP2C9, ACOX2, ACSL6, SLCO1A2, TNFRSF11B APOC1, ABCB1, CYP4A14, JUN, SLC10A1, SLCO1A2, TNFRSF11B
TR/RXR Activation 0,006 NS SLC2A1, AKT3, ACACA, THRSP, PPARGC1A THRB, THRSP
Glucocorticoid Receptor Signaling 0,006 NS TSC22D3, JUN, HSPA1A, DUSP1, TGFB3, AKT3, STAT3, CEBPB, PTGS2 JUN, HSPA1A, ANXA1
Intrinsic Prothrombin Activation Pathway 0,007 0,002 KLK1, THBD, COL18A1 KLK1, THBD, COL18A1
Crosstalk between Dendritic Cells and Natural Killer Cells 0,007 NS CAMK2D, IL3RA, KLRD1, LTA, ACTG2 (includes EG:72) IL3RA, KLRD1
Fcγ Receptor-mediated Phagocytosis in Macrophages and Monocytes 0,007 NS SYK, LYN, AKT3, VAV1, ACTG2 (includes EG:72) SYK, LYN, VAV1
PPAR Signaling 0,008 NS JUN, PTGS2, CITED2, TNFRSF11B, PPARGC1A JUN, TNFRSF11B
HGF Signaling 0,010 NS JUN, AKT3, STAT3, PTGS2, CCND1 JUN
Disease associated pathways
Huntington's Disease Signaling 0,001 0,003 TGM2, NSF, CAPN8, KLK1, JUN, BDNF, HSPA1A, SGK1, AKT3, GOSR2 TGM2, CAPN8, KLK1, JUN, BDNF, HSPA1A, GOSR2
Colorectal Cancer Metastasis Signaling 0,004 NS JUN, IL6R, TGFB3, AKT3, STAT3, MMP24, PTGS2, ADCY8, CCND1 -
Type II Diabetes Mellitus Signaling 0,004 NS ACSL6, CD36, AKT3, CEBPB, IRS3, TNFRSF11B CD36, TNFRSF11B
Hepatic Cholestasis 0,009 0,0001 SLCO1C1, ABCB1, JUN, SLCO1A2, ADCY8, TNFRSF11B SLCO1C1, ABCB1, JUN, SLC10A1, ABCC1, SLCO1A2, TNFRSF11B
Hepatic Fibrosis / Hepatic Stellate Cell Activation 0,010 NS FN1, CTGF, LEPR, IL6R, TGFB3, TNFRSF11B LEPR, TGFA, TNFRSF11B