Table 1. Epidemiological details of the E. coli isolates used in this work. (H = Hospitalized patients; C = Community patients; F = Healthy volunteers; A = animals; E = Environment; S = Ready-to-eat salads).
Phylogroup | ST/fumC | Continent (N° countries) | N° of Isolates | Date | Origina (N° Isolates) | Ref |
---|---|---|---|---|---|---|
B2 | 131 | Europe (7) | 26 | 1991–2010 | H (19), C (1), F (4), E (2) | [23] |
131 | North America (1) | 3 | 2008 | A (3) | [23] | |
131 | Asia (1) | 2 | 2006–2007 | C (2) | [23] | |
1035 | Europe (1) | 1 | 2005 | H (1) | [23] | |
95 | South America (1) | 1 | 2011 | H (1) | * | |
12 | Europe (1) | 1 | 2007 | H (1) | * | |
355-like | Europe (1) | 1 | 2007 | H (1) | * | |
126-like | Europe (1) | 1 | 2007 | A (1) | [25] | |
799-like | Europe (1) | 1 | 2006/07 | A (1) | [25] | |
fumC11 | Europe (1) | 1 | 2010 | H (1) | * | |
fumC103 | Europe (1) | 1 | 2006 | H (1) | * | |
D | 69 | Europe (3) | 7 | 2002–2010 | H (3), S (2), C (1), A (1) | [24] |
69 | North America (1) | 5 | 1999–2000 | H (5) | [24] | |
69 | South America (1) | 1 | - | H (1) | [24] | |
393 | Europe (3) | 5 | 2002–2006 | F (3), C (1), H (1) | [24] | |
393 | North America (1) | 3 | 1980–1999 | H (3) | [24] | |
393 | Asia (1) | 2 | 2006–7 | C (2) | [24] | |
2321 | Europe (1) | 1 | 2008 | H (1) | [24] | |
405 | Europe (4) | 9 | 2000–2008 | H (7), C (2) | [24] | |
405 | Asia (1) | 1 | 2004 | H (1) | [24] | |
964 | Europe (1) | 1 | 2003 | H (1) | [24] | |
117 | Europe (1) | 4 | 2006–2010 | H (4) | * | |
New STa | Europe (1) | 1 | 2010 | H (1) | * | |
648 | Europe (1) | 1 | 2006 | H (1) | * | |
1011 | Europe (1) | 2 | 2010 | H (2) | * | |
1325 | Europe (1) | 1 | 2010 | H (1) | * | |
3177 | Europe (1) | 1 | 2007 | H (1) | * | |
fumC88 | Europe (1) | 1 | 2010 | H (1) | * | |
fumC31 | Europe (1) | 3 | 2010 | H (3) | * |
aDouble locus variant (DLV) of ST117;
*unpublished data.