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. 2013 Nov 20;8(11):e79390. doi: 10.1371/journal.pone.0079390

Table 1. The differentially expressed genes (|log2|ratio (infected/control)≥5).

Gene ID Control -RPKM Infected -RPKM |Log2|ratio P-value FDR Description
CA594889 0.001 27.68816 14.75698 1.72E−06 0.000046 Ta cDNA clone: WT012_D04
EB512672 0.001 24.2069 14.56313 1.06E−07 3.75E−06 Blue copper-binding protein homolog
TC374940 0.001 21.75113 14.4088 0 0 Pathogenesis-related 1a
GH722147 0.001 14.4799 13.82176 1.97E−10 1.19E−08 Xylanase inhibitor precursor
TC420579 0.001 14.32455 13.8062 6.01E−12 4.65E−10 Response regulator
CA683879 0.001 14.02145 13.77535 7.96E−10 4.33E−08 Oxalate oxidase 2 precursor
TC440260 0.001 13.67654 13.73942 6.47E−09 2.94E−07 Putative disease resistance protein RGA3-like
CF133353 0.001 12.02828 13.55414 0.000014 0.000287
CJ654139 0.001 10.98716 13.42353 2.12E−07 7.04E−06 Os07g0137900 protein
CA661174 0.001 10.48387 13.35588 1.72E−06 4.61E−05 Prion-like-(Q/n-rich)-domain-bearing protein protein 75
TC397228 0.001 10.1623 13.31094 6.47E−09 2.94E−07
TC416495 0.001 10.04916 13.29479 3.47E−06 8.54E−05 Mannose phosphate isomerase (MPI)
TC451603 0.001 9.740984 13.24985 1.6E−09 8.17E−08 LOC496215 protein
CA693299 0.001 9.60027 13.22886 2.82E−05 0.000523
BE414946 0.001 9.059047 13.14514 1.72E−06 0.000046 4-coumarate-CoA ligase 4CL2
BJ236765 0.001 8.983681 13.13309 1.72E−06 4.61E−05
TC455795 0.001 8.654863 13.0793 3.47E−06 8.53E−05
TC458503 0.001 8.165747 12.99537 2.61E−08 1.05E−06 Early nodulin protein
CJ875280 0.001 7.524698 12.87742 6.97E−06 0.000156
CA663181 0.001 7.492188 12.87117 5.66E−05 0.00095 Os04g0630300 protein
TC442697 0.001 7.417109 12.85664 0.000014 0.000287
CA638794 0.001 7.413078 12.85586 2.82E−05 0.000523 Protein kinase domain containing protein
TC426144 0.001 7.374602 12.84835 2.82E−05 0.000523 Vitis vinifera Chromosome chr8 scaffold_106
CA499029 0.001 7.253538 12.82447 6.97E−06 0.000156 Nitrate-induced NOI protein
BM135604 0.001 6.897282 12.75181 2.82E−05 0.000523
CJ696409 0.001 6.893563 12.75103 3.47E−06 8.54E−05 Transcription initiation factor
TC418073 0.001 5.809657 12.50424 1.06E−07 3.75E−06 Phenylalanine ammonia-lyase
TC415483 0.001 5.710553 12.47941 4.27E−07 1.32E−05 Glucosyltransferase
TC392329 0.001 5.470306 12.41741 1.72E−06 4.61E−05 Reponse regulator 6
TC381923 0.001 4.514375 12.14031 1.72E−06 4.61E−05 Vitis vinifera Chromosome chr2 scaffold_105
TC458205 0.001 3.898996 11.92889 6.97E−06 0.000156 High molecular weight glutenin subunit
CK211359 0.001 3.700793 11.85362 5.66E−05 0.000951 NADH dehydrogenase subunit I
TC379055 0.001 2.43027 11.2469 5.66E−05 0.000951 UDP-glucosyltransferase
TC414250 5.548758 867.0767 7.287851 1.7E−06 4.56E−05 Wali6 protein
TC415670 7.672419 1009.571 7.039846 8.1E−08 2.95E−06 Wali3 protein
TC416295 3.794324 390.9363 6.686947 9.61E−06 0.000207 Wali6 protein
TC426400 3.150807 126.3979 5.326108 9.61E−06 0.000207 ATP-dependent Clp protease proteolytic subunit
TC447088 17.75787 0.001 −14.1162 2.11E−06 5.52E−05
CA501626 13.80722 0.001 −13.7531 1.66E−05 0.000333
CA678188 13.02965 0.001 −13.6695 2.68E−07 8.68E−06 Os10g0329400 protein
TC396751 12.65317 0.001 −13.6272 1.09E−09 5.73E−08 Histone H2B.4
TC374009 12.05666 0.001 −13.5575 2.82E−13 2.89E−11 Agrostis stolonifera Crs-1
CA606062 11.30046 0.001 −13.4641 2.11E−06 5.52E−05 Vacuolar-processing enzyme gamma- isozyme precursor
CA654969 10.32932 0.001 −13.3345 8.35E−06 0.000183
CD931119 9.342799 0.001 −13.1896 4.2E−06 0.000101 Kinesin heavy chain
CA642440 9.315299 0.001 −13.1854 3.31E−05 0.000598 TonB-like protein
CJ536742 8.682779 0.001 −13.0839 3.31E−05 0.000598
TC414261 6.403385 0.001 −12.6446 3.31E−05 0.000598 ERN2
TC390944 6.107886 0.001 −12.5765 8.35E−06 0.000183 Pathogenesis related protein-1
TC409167 5.647619 0.001 −12.4634 1.66E−05 0.000334
TC441032 5.39911 0.001 −12.3985 2.11E−06 5.52E−05 Mitochondrial ATP synthase
CK205455 5.16714 0.001 −12.3352 4.2E−06 0.000101
TC416474 5.10914 0.001 −12.3189 1.66E−05 0.000334 TBP-binding protein-like
TC432960 5.050132 0.001 −12.3021 8.35E−06 0.000183
TC392126 4.7211 0.001 −12.2049 8.35E−06 0.000183 Germin-like protein 6a
TC434510 28.3137 0.366668 −6.27088 1.98E−22 5.33E−20 Peroxidase PXC2 precursor