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. 2013 Nov 20;8(11):e79390. doi: 10.1371/journal.pone.0079390

Table 3. Pathway analysis of DEGs based on KEGG database.

Pathway Annotation (number) Annotation rate (%) P-value Q-value Pathway ID
Metabolic pathways 507 16.72 1 1.00E+00 ko01100
Biosynthesis of secondary metabolites 287 9.47 0.999988 1.00E+00 ko01110
Plant-pathogen interaction 111 3.66 0.940559 1.00E+00 ko04626
Phenylpropanoid biosynthesis 102 3.36 0.078706 3.49E−01 ko00940
Spliceosome 95 3.13 0.008077 5.27E−02 ko03040
Ribosome 85 2.80 1 1.00E+00 ko03010
Starch and sucrose metabolism 79 2.61 0.082119 3.51E−01 ko00500
Purine metabolism 73 2.41 2.22E−06 4.93E−05 ko00230
Phenylalanine metabolism 72 2.37 0.007202 5.00E−02 ko00360
Protein processing in endoplasmic reticulum 67 2.21 0.998354 1.00E+00 ko04141
Glutathione metabolism 65 2.14 0.002017 2.24E−02 ko00480
Ubiquitin mediated proteolysis 51 1.68 0.149354 5.42E−01 ko04120
Endocytosis 50 1.65 0.006456 4.78E−02 ko04144
Amino sugar and nucleotide sugar metabolism 49 1.62 0.024959 1.39E−01 ko00520
Pyrimidine metabolism 48 1.58 0.004626 3.67E−02 ko00240
DNA replication 41 1.35 1.32E−11 1.47E−09 ko03030
Alpha-Linolenic acid metabolism 39 1.29 0.000108 1.50E−03 ko00592
RNA degradation 38 1.25 0.003272 2.79E−02 ko03018
Nucleotide excision repair 36 1.19 3.35E−06 6.20E−05 ko03420
Peroxisome 35 1.15 0.774472 1.00E+00 ko04146
Flavonoid biosynthesis 34 1.12 0.539443 1.00E+00 ko00941
Cysteine and methionine metabolism 33 1.09 0.971505 1.00E+00 ko00270
Glycolysis/Gluconeogenesis 33 1.09 1 1.00E+00 ko00010
Nitrogen metabolism 32 1.06 0.220608 7.65E−01 ko00910
Galactose metabolism 31 1.02 0.021792 1.27E−01 ko00052
Phagosome 31 1.02 0.999595 1.00E+00 ko04145
ABC transporters 30 0.99 3.41E−10 1.89E−08 ko02010
Base excision repair 29 0.96 6.56E−07 2.19E−05 ko03410
Cyanoamino acid metabolism 29 0.96 0.110194 4.37E−01 ko00460
Stilbenoid, diarylheptanoid and gingerol biosynthesis 29 0.96 0.693333 1.00E+00 ko00945
Tryptophan metabolism 26 0.86 0.4863 1.00E+00 ko00380
Oxidative phosphorylation 26 0.86 1 1.00E+00 ko00190
Fructose and mannose metabolism 25 0.82 0.903134 1.00E+00 ko00051
Zeatin biosynthesis 23 0.76 0.002555 2.58E−02 ko00908
Carbon fixation in photosynthetic organisms 23 0.76 1 1.00E+00 ko00710
Mismatch repair 22 0.73 8.79E−06 1.39E−04 ko03430
Phosphatidylinositol signaling system 22 0.73 0.133323 5.10E−01 ko04070
Limonene and pinene degradation 21 0.69 0.899491 1.00E+00 ko00903
RNA polymerase 20 0.66 0.001317 1.62E−02 ko03020
Selenoamino acid metabolism 20 0.66 0.353576 1.00E+00 ko00450
Pyruvate metabolism 20 0.66 0.99903 1.00E+00 ko00620
Fatty acid metabolism 19 0.63 0.784428 1.00E+00 ko00071
Sulfur metabolism 17 0.56 0.003233 2.79E−02 ko00920
Inositol phosphate metabolism 17 0.56 0.362768 1.00E+00 ko00562
Aminoacyl-tRNA biosynthesis 17 0.56 0.420217 1.00E+00 ko00970
Alanine, aspartate and glutamate metabolism 17 0.56 0.941328 1.00E+00 ko00250
Citrate cycle (TCA cycle) 17 0.56 0.989953 1.00E+00 ko00020
Circadian rhythm - plant 16 0.53 0.68574 1.00E+00 ko04712
Arginine and proline metabolism 15 0.49 0.998069 1.00E+00 ko00330
Linoleic acid metabolism 14 0.46 0.468498 1.00E+00 ko00591
Proteasome 14 0.46 0.999554 1.00E+00 ko03050
Homologous recombination 13 0.43 0.054938 2.54E−01 ko03440
Glycerolipid metabolism 13 0.43 0.888763 1.00E+00 ko00561
Caffeine metabolism 12 0.40 7.91E−07 2.19E−05 ko00232
Valine, leucine and isoleucine biosynthesis 12 0.40 0.430602 1.00E+00 ko00290
Biosynthesis of unsaturated fatty acids 12 0.40 0.82953 1.00E+00 ko01040
Benzoxazinoid biosynthesis 12 0.40 0.921449 1.00E+00 ko00402
Tyrosine metabolism 12 0.40 0.927114 1.00E+00 ko00350
Pentose phosphate pathway 12 0.40 0.999553 1.00E+00 ko00030
Glyoxylate and dicarboxylate metabolism 12 0.40 1 1.00E+00 ko00630
Sphingolipid metabolism 11 0.36 0.050595 2.50E−01 ko00600
N-Glycan biosynthesis 10 0.33 0.38074 1.00E+00 ko00510
Glycerophospholipid metabolism 10 0.33 0.985818 1.00E+00 ko00564
Ascorbate and aldarate metabolism 10 0.33 0.997898 1.00E+00 ko00053
Other glycan degradation 9 0.30 0.01401 8.64E−02 ko00511
SNARE interactions in vesicular transport 9 0.30 0.604893 1.00E+00 ko04130
Fatty acid biosynthesis 9 0.30 0.756422 1.00E+00 ko00061
Terpenoid backbone biosynthesis 9 0.30 0.791906 1.00E+00 ko00900
Lysine degradation 9 0.30 0.87531 1.00E+00 ko00310
Butanoate metabolism 9 0.30 0.974329 1.00E+00 ko00650
Glycine, serine and threonine metabolism 9 0.30 0.976647 1.00E+00 ko00260
Pantothenate and CoA biosynthesis 8 0.26 0.381927 1.00E+00 ko00770
Valine, leucine and isoleucine degradation 8 0.26 0.996475 1.00E+00 ko00280
Ether lipid metabolism 7 0.23 0.386485 1.00E+00 ko00565
Tropane, piperidine and pyridine alkaloid biosynthesis 7 0.23 0.474718 1.00E+00 ko00960
Diterpenoid biosynthesis 7 0.23 0.515453 1.00E+00 ko00904
Regulation of autophagy 7 0.23 0.696261 1.00E+00 ko04140
Natural killer cell mediated cytotoxicity 7 0.23 0.788938 1.00E+00 ko04650
Propanoate metabolism 7 0.23 0.99625 1.00E+00 ko00640
Indole alkaloid biosynthesis 6 0.20 0.099823 4.10E−01 ko00901
Basal transcription factors 6 0.20 0.892823 1.00E+00 ko03022
Pentose and glucuronate interconversions 6 0.20 0.975639 1.00E+00 ko00040
Phenylalanine, tyrosine and tryptophan biosynthesis 6 0.20 0.980414 1.00E+00 ko00400
Flavone and flavonol biosynthesis 6 0.20 0.982781 1.00E+00 ko00944
Protein export 6 0.20 0.993342 1.00E+00 ko03060
Isoquinoline alkaloid biosynthesis 5 0.16 0.70927 1.00E+00 ko00950
Glucosinolate biosynthesis 5 0.16 0.811041 1.00E+00 ko00966
Porphyrin and chlorophyll metabolism 5 0.16 0.999916 1.00E+00 ko00860
Non-homologous end-joining 4 0.13 0.03947 2.09E−01 ko03450
Ubiquinone and other terpenoid- quinone biosynthesis 4 0.13 0.966216 1.00E+00 ko00130
Histidine metabolism 4 0.13 0.982783 1.00E+00 ko00340
Steroid biosynthesis 4 0.13 0.987955 1.00E+00 ko00100
beta-Alanine metabolism 4 0.13 0.998679 1.00E+00 ko00410
Glycosphingolipid biosynthesis - ganglio series 3 0.10 0.151237 5.42E−01 ko00604
Glycosaminoglycan degradation 3 0.10 0.340238 1.00E+00 ko00531
Lysine biosynthesis 3 0.10 0.625386 1.00E+00 ko00300
One carbon pool by folate 3 0.10 0.899855 1.00E+00 ko00670
Carotenoid biosynthesis 3 0.10 0.960924 1.00E+00 ko00906
Anthocyanin biosynthesis 2 0.07 0.051858 2.50E−01 ko00942
Vitamin B6 metabolism 2 0.07 0.431126 1.00E+00 ko00750
C5-Branched dibasic acid metabolism 2 0.07 0.497579 1.00E+00 ko00660
Glycosphingolipid biosynthesis - globo series 2 0.07 0.622102 1.00E+00 ko00603
Folate biosynthesis 2 0.07 0.684606 1.00E+00 ko00790
Synthesis and degradation of ketone bodies 2 0.07 0.684606 1.00E+00 ko00072
Thiamine metabolism 2 0.07 0.697287 1.00E+00 ko00730
Nicotinate and nicotinamide metabolism 2 0.07 0.793251 1.00E+00 ko00760
Polyketide sugar unit biosynthesis 2 0.07 0.95041 1.00E+00 ko00523
Biotin metabolism 1 0.03 0.658762 1.00E+00 ko00780
Arachidonic acid metabolism 1 0.03 0.982434 1.00E+00 ko00590
Photosynthesis 1 0.03 1 1.00E+00 ko00195
Photosynthesis - antenna proteins 1 0.03 1 1.00E+00 ko00196