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. 2013 Nov 20;8(11):e80326. doi: 10.1371/journal.pone.0080326

Table 2. Most statistically significant Single Nucleotide Polymorphisms based on GWAS Results from Meta-Analysis of 7 Cohorts (p<1×10−5).

SNP Chr Position A1 A2 Frequency (A1) Effect Standard Error P-value Effect direction n Heterogeneity (i2) P-value (Hetero-geneity) # Support SNPs* Closest Gene (<50 kb)
rs4911015 13 84985734 A T 0.87 −0.20 0.04 7.38E-07 −−−+−−− 11125 0.00 0.82 9
rs426691 8 55294178 C T 0.61 −0.14 0.03 1.08E-06 −−−−−−+ 11126 0.46 0.07 2
rs17825699 1 230254964 T G 0.76 0.16 0.03 1.20E-06 +++++++ 11125 0.00 0.61 0 DISC1
rs9728264 1 230291141 G A 0.42 0.12 0.03 2.31E-06 +++++++ 11125 0.11 0.88 18 DISC1
rs789651 1 230760474 A C 0.96 −0.31 0.07 4.47E-06 −−−−−−− 11125 0.00 0.59 11 SIPA1L2
rs12787660 11 11109384 G A 0.54 0.12 0.03 4.84E-06 +++++++ 11126 0.00 0.21 7
rs10794718 10 1132750 T C 0.47 −0.12 0.03 4.85E-06 −+−−−−− 11127 0.55 0.24 0 KIAA0982
rs3788398 22 25160478 G A 0.95 0.26 0.06 5.17E-06 +++++++ 11124 0.00 0.32 19 ASPHD2
rs12636740 3 174527418 G A 0.75 −0.15 0.03 5.48E-06 −−−−−−− 11126 0.00 0.66 31
rs1258724 15 30848487 T C 0.74 −0.13 0.03 6.82E-06 −−−−−−− 11127 0.00 0.97 11 FMN1

Chr = Chromosome, A1 = coded allele, A2 = non-coded allele.

*

Number of SNPs within 250 kb of indicator SNP, linkage disequilibrium threshold of R2≥0.5, and p for association <0.01.