Table 2. Most statistically significant Single Nucleotide Polymorphisms based on GWAS Results from Meta-Analysis of 7 Cohorts (p<1×10−5).
SNP | Chr | Position | A1 | A2 | Frequency (A1) | Effect | Standard Error | P-value | Effect direction | n | Heterogeneity (i2) | P-value (Hetero-geneity) | # Support SNPs* | Closest Gene (<50 kb) |
rs4911015 | 13 | 84985734 | A | T | 0.87 | −0.20 | 0.04 | 7.38E-07 | −−−+−−− | 11125 | 0.00 | 0.82 | 9 | |
rs426691 | 8 | 55294178 | C | T | 0.61 | −0.14 | 0.03 | 1.08E-06 | −−−−−−+ | 11126 | 0.46 | 0.07 | 2 | |
rs17825699 | 1 | 230254964 | T | G | 0.76 | 0.16 | 0.03 | 1.20E-06 | +++++++ | 11125 | 0.00 | 0.61 | 0 | DISC1 |
rs9728264 | 1 | 230291141 | G | A | 0.42 | 0.12 | 0.03 | 2.31E-06 | +++++++ | 11125 | 0.11 | 0.88 | 18 | DISC1 |
rs789651 | 1 | 230760474 | A | C | 0.96 | −0.31 | 0.07 | 4.47E-06 | −−−−−−− | 11125 | 0.00 | 0.59 | 11 | SIPA1L2 |
rs12787660 | 11 | 11109384 | G | A | 0.54 | 0.12 | 0.03 | 4.84E-06 | +++++++ | 11126 | 0.00 | 0.21 | 7 | |
rs10794718 | 10 | 1132750 | T | C | 0.47 | −0.12 | 0.03 | 4.85E-06 | −+−−−−− | 11127 | 0.55 | 0.24 | 0 | KIAA0982 |
rs3788398 | 22 | 25160478 | G | A | 0.95 | 0.26 | 0.06 | 5.17E-06 | +++++++ | 11124 | 0.00 | 0.32 | 19 | ASPHD2 |
rs12636740 | 3 | 174527418 | G | A | 0.75 | −0.15 | 0.03 | 5.48E-06 | −−−−−−− | 11126 | 0.00 | 0.66 | 31 | |
rs1258724 | 15 | 30848487 | T | C | 0.74 | −0.13 | 0.03 | 6.82E-06 | −−−−−−− | 11127 | 0.00 | 0.97 | 11 | FMN1 |
Chr = Chromosome, A1 = coded allele, A2 = non-coded allele.
Number of SNPs within 250 kb of indicator SNP, linkage disequilibrium threshold of R2≥0.5, and p for association <0.01.