Table 1.
SNP | Primers | Amplicon size (bp) | Annealing temperature | Restriction enzyme | Restriction fragments size (bp) |
---|---|---|---|---|---|
rs6534349 A/G | F: 5′CCTACTGTTTCTAGTTACTG | 437 | 49 °C | BstNI (MvaI) | Allele A: 84 + 353 |
R: 5′AGATTGGGACTATAAGACTG | Allele G: 84 + 153 + 200 | ||||
rs2069762 T/G | F:5′ATTCACATGTTCAGTGTAGTTCTA | 229 | 50 °C | BfaI (FspBI) | Allele T: 229 |
R: 5′TCCTCTTCTGATGACTCTTTG | Allele G: 22 + 207 | ||||
rs3136534 A/C | F: 5′GCCAAGGCTCTAGGTGAACA | 359 | 57 °C | PsuI (BstYI) | Allele A: 359 |
R: 5′CAAGCTCTGCCTACCAGGTT | Allele C: 87 + 272 |
The forward primer of the rs2069762 was modified (T→C) in order to include a BfaI restriction site