Table 2.

Folders produced by BrainCAT.

Folder	Contents
{SUBJID}/FMRI	Original NIfTI functional images and the images and files resulting from preprocessing of the functional acquisition of subject SUBJID
{SUBJID}/MRI	Original NIfTI structural images and the images and files resulting from preprocessing of the structural acquisition of subject SUBJID
{SUBJID}/DTI	Original NIfTI diffusion images and the images and files resulting from preprocessing of the diffusion acquisition of subject SUBJID
{SUBJID}/Tractography	Tensor fitting and tractography results of subject SUBJID
{SUBJID}/ICA/	Independent component analysis results in SUBJID native space
{SUBJID}/ICA/GroupICA_ROIS	ROI masks extracted from GroupICA analysis in the native space of diffusion acquisition
GroupICA	Results of the GroupICA analysis
GroupICA/Individual_ICs	Individual subject independent components resulting from dual_regression of the GroupICA results
GroupTracts	Combined cross-subject results of the tractography analysis

{SUJID} represents the id of the subject being analyzed.