Table 2.

The original GWAS tagSNP and the most associated variant after imputation with 1000 genomes and CG panel together with pair wise LD metrics (r², D′)

	tagSNP					top SNP					R2	D′
	SNP	Position	OR	P-value	MAF	SNP	Position	OR	P-value	MAF
1q41	rs6691170	222 045 446	1.08	2.39E−03	0.397	rs11118883	222 061 022	1.12	1.18E−04	0.348	0.393	0.719
3q26	rs10936599	169 492 101	1.12	2.20E−04	0.253	Indel	169 583 245	1.10	9.79E−05	0.250	0.906a	1.000a
6p21	rs1321311	36 622 900	1.08	4.88E−03	0.205	rs9918353	36 622 677	1.08	3.13E−03	0.205	0.985	0.995
8q23	rs16892766	117 630 683	1.24	7.84E−07	0.092	rs140355816	117 574 515	1.61	2.58E−09	0.017	0.092	0.724
8q24	rs6983267	128 413 305	1.20	1.64E−12	0.480	rs7013278	128 414 892	1.20	1.63E−12	0.343	0.444	1.000
10p14	rs10795668	8 701 219	1.17	3.97E−09	0.327	rs11255841	8 739 580	1.19	7.73E−11	0.321	0.850	0.931
11q13	rs3824999	74 345 550	1.16	2.57E−09	0.471	rs11604752	74 277 144	1.16	7.29E−10	0.476	0.919	0.973
11q23	rs3802842	111 171 709	1.15	4.48E−06	0.269	rs11213801	111 119 694	1.15	1.88E−07	0.276	0.317	0.794
12q13	rs11169552	51 155 663	1.12	9.05E−05	0.247	rs61928263	50 588 659	1.17	4.42E−08	0.223	0.022	0.775
14q22	rs4444235	54 410 919	1.10	3.34E−04	0.483	—	—	—	—	—	1.000	1.000
15q13	rs4779584	32 994 756	1.21	7.28E−09	0.191	rs1406389	33 009 478	1.24	7.57E−12	0.222	0.269	0.652
16q22	rs9929218	68 820 946	1.09	5.75E−04	0.286	rs146639854	68 429 091	1.36	8.30E−05	0.020	0.009	1.000
18q21	rs4939827	46 453 463	1.24	7.29E−16	0.471	Indel	46 451 805	1.25	2.08E−17	0.421	0.568a	0.963a
19q13	rs10411210	33 532 300	1.25	2.11E−06	0.096	rs79812655	33 517 923	1.23	1.27E−07	0.131	0.419	0.717
20p12	rs961253	6 404 281	1.10	2.66E−04	0.367	rs990999	6 692 529	1.13	6.49E−06	0.377	0.001	0.028
20q13	rs4925386	60 921 044	1.16	8.31E−07	0.318	rs2236202	60 985 164	1.22	2.02E−11	0.249	0.214	0.591

^aFor indels, the next most associated SNP was used to derive LD statistics.