Figure 3. Dynamics and linkage of mutations above 10% allele frequency in (A) E1, (B) E2 and (C) E3.

Mutations and frequencies were discovered from population sequencing, and linkage with other mutations and the fluorescent marker was determined by genotyping clones. HXT6/7 frequency data in E3 are from [12]. The red, yellow and green indicate the frequencies of the fluorescent makers (compare to Figure 1 of [12]) with lineages within those differently marked subpopulations originating from within them.