Maximum-likelihood phylogenetic tree (hemagglutinin segment) of the 787 sequences that comprise the regional influenza (H3N2) dataset. Tree is rooted on A/Canterbury/179/1999, and bootstrap values are shown on key nodes. Branches are colored by location: red, Vietnam; purple, Australia or New Zealand; green, Hong Kong; blue, Taiwan; orange, Singapore. Labels are shown directly to the left or right of the clades they are describing, with 2 exceptions: the label “VN Jun 2003–Jan 2004” refers to the viruses directly above it, and the label “ANZ 2000/2001” refers to the 2 major clades below it and above it. KG, Kyrgyzstan; VN, Vietnam; JP, Japan; KR, South Korea; QA, Qatar; KW, Kuwait; TW, Taiwan; HK, Hong Kong; ANZ, Australia and New Zealand. Scale bar indicates nucleotide substitutions per site.