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. 2013 Dec;51(12):4262–4265. doi: 10.1128/JCM.02227-13

Table 1.

Deep-sequencing results

No. of reads % of reads Classificationa
13,000 35.94 Staphylococcus aureus*
4,402 12.17 Alcaligenes faecalis
3,049 8.43 Acinetobacter bereziniae/A. guillouiae*
1,449 4.01 Comamonas testosteroni*/C. thiooxidans*
1,084 3.00 Acinetobacter lwoffii*
935 2.59 Acinetobacter lwoffii*/A. psychrotolerans
924 2.55 Pseudomonas geniculata/P. hibiscicola; Stenotrophomonas maltophilia
748 2.07 Actinomadura madurae*
747 2.07 Flavobacterium lindanitolerans
738 2.04 Escherichia coli*/E. fergusonii*; Shigella dysenteriae*/S. flexneri*
654 1.81 Campylobacter concisus
476 1.32 Enterobacter cowanii; Escherichia coli*/E. hermannii; Shigella boydii/S. flexneri/S. sonnei
458 1.27 Staphylococcus epidermidis
417 1.15 Ochrobactrum anthropi*/O. cytisi*/O. lupini*
377 1.04 Enterobacter asburiae*/E. cancerogenus*/E. cloacae/E. cowanii; Leclercia adecarboxylata
4,120 11.39 ≤99.0% match to a reference strain
a

Asterisks indicate the presence of reads with 100% identity to a reference strain.