Table 1.
Comparison of strains in PBMC and buccal swab samples from five sites
| Location and ID of SFV+ macaques | Straina (no. of clones) in: |
FV RNA | |
|---|---|---|---|
| PBMCs | Buccal swabs | ||
| Charmaguria (n = 10) and Dhamrai (n = 18) | |||
| MBG54, 61, 67 | CM (5, 6, 5) | CM (3, 3, 4) | Yes |
| MBG184, 186, 188, 226, 228, 232 | DM (6, 6, 6, 8, 6, 4) | DM (5, 9, 7, 5, 6, 6) | Yes |
| MBG6,175,177,180,182,183,185,187, 229–331, 233 | DM | DM | No |
| MBG55, 57, 58, 59, 60, 65, 68 | CM | CM | No |
| Bormi (n = 13) | |||
| MBG202, 208, 214 | BM1 (6, 6, 7) | BM1 (6, 4, 3) | Yes |
| MBG204, 205 | BM2 (6, 7) | BM2 (3, 4) | Yes |
| MBG206 | BM1 (8) | BM1 (6), BM2 (1) | Yes |
| MBG212 | BM1 (5) | DK (6) | Yes |
| MBG234 | BM1 (3), BM2 (2), NCS (1) | BM2 (6) | Yes |
| MBG237 | BM2 (4) | BM1 (5) | Yes |
| MBG239 | BM1 (4) | BM1 (1), DK(1), BM2 (4) | Yes |
| MBG85 | BM1 (4), BM2 (3) | BM1 (2) | Yes |
| MBG238 | BM1 (2), DK (1), BM2 (1), NCS (2) | BM1 | Yes |
| MBG236 | DM, DK | DM, DK | No |
| Narayanganj (n = 10) | |||
| MBG269 | DM (6) | DM (5), NCS (1) | Yes |
| MBG270, 271 | DM (6, 6) | DM (6, 6) | Yes |
| MBG109 | DM | NCS | No |
| MBG189, 196, 197 | DM | DM | No |
| MBG193 | NCS | DM | No |
| MBG108 | BM2, NCS | DM | No |
| MBG192 | DM, NCS | DM | No |
| Dokhola (n = 10) | |||
| MBG164 | DM (4), BM2 (1), NCS (1) | DM (3) | Yes |
| MBG241 | DK (5), NCS (1) | DK (6) | Yes |
| MBG243 | DK (1), DM (5) | DK (3) | Yes |
| MBG244 | DK (4), BM2 (1), NCS (1) | DK (2), DM (4) | Yes |
| MBG246 | DK (5), BM2 (1) | DK (5), BM2 (1) | Yes |
| MBG247 | DK (5) | DM (4) | Yes |
| MBG157 | DK | DM, DK | No |
| MBG159 | DK, DM | DM | No |
| MBG240 | DK | DK | No |
| MBG242 | DM, DK | DK | No |
a
Strain abbreviations: CM, charmaguria; DM, dhamrai; DK, dokhola; BM1 and BM2, bormi1 and bormi2, respectively; NCS, noncore strains.