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. 2013 Nov 22;8(11):e79704. doi: 10.1371/journal.pone.0079704

Figure 3. Organization of pathogenicity-related gene clusters in the Xam CIO151 genome.

Figure 3

Open arrows with labels indicate genes with assigned functions, black arrows indicate genes with early stop codons, open arrows without labels indicate conserved hypothetical proteins and grey arrows indicate non-conserved hypothetical proteins. Graphs above clusters show the G+C content and deviations from the average value. A. Xanthomonadin gene cluster; * indicates genes related to pigB genomic region and ** indicates genes reported as important for cluster functionality. Abbreviations used are: H = halogenase (xanmn_chr15_0075), BP = xanthomonadin biosynthesis protein (xanmn_chr15_0079), E = xanthomonadin exporter (xanmn_chr15_0373), PSP = putative secreted protein (xanmn_chr15_0080), BACPD = xanthomonadin biosynthesis acyl carrier protein dehydratase (xanmn_chr15_0082), BA = putative xanthomonadin biosynthesis acyltransferase (xanmn_chr15_0081 and xanmn_chr15_0083), BMP = putative xanthomonadin biosynthesis membrane protein (xanmn_chr15_0084), ACP = acyl carrier protein (xanmn_chr15_0085), XanB1 = putative reductase/halogenase (xanmn_chr15_0086), XanB2 = putative pteridine-dependent deoxygenase like protein (xanmn_chr15_0087), AMP-l = AMP-ligase (xanmn_chr15_0088), DP = dipeptidyl peptidase (xanmn_chr15_0090). B. Cluster implicated in xanthan production (gum). C. Regulation of pathogenicity factors (rpf) cluster. D. Type III secretion system (T3SS) cluster.