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. Author manuscript; available in PMC: 2014 Aug 27.
Published in final edited form as: Biochemistry. 2013 Aug 15;52(34):10.1021/bi400788s. doi: 10.1021/bi400788s

Table 1.

Summary of the dissociation constants, the changes in the heat capacity upon binding, and the kinetic rate constants of the TRTK12 wild-type peptide and alanine variants binding to S100B at 25°C.

Peptide Kda μM ΔCp, expb kJ·mol−1 K−1 ΔCp, calcc kJ·mol−1 K−1 koff (s−1)d kon (1×107 M−1s−1)e
TRTK12 1.7 ± 0.1 (3 ± 1) −1.2 ± 0.2 −1.4 ± 0.1 53 ± 4 3.1 ± 0.3
TRTKM1 2.9 ± 1.0 (0.2 ± 0.1) −1.2 ± 0.1 −1.3 ± 0.1 34 ± 2 1.2 ± 0.1
TRTKM5 1.2 ± 0.4 (0.6 ± 0.6) −1.0 ± 0.1 −1.2 ± 0.1 66 ± 7 5.5 ± 1.9
TRTKM6 1.3 ± 0.6 (5 ± 1) −1.3 ± 0.1 −1.5 ± 0.1 31 ± 1 6.6 ± 1.0
TRTKM9 1.7 ± 0.1 (2 ± 1) −1.5 ± 0.1 −1.5 ± 0.1 53 ± 8 3.1 ± 0.5
TRTKM10 3.4 ± 1.0 (1 ± 0.1) −1.0 ± 0.1 −1.1 ± 0.1 36 ± 8 1.1 ± 0.4
TRTKM11 3.8 ± 1.0 (10 ± 3) −1.6 ± 0.2 −1.3 ± 0.1 n.a. n.a.
a

Dissociation constants obtained using ITC. Values in parentheses were obtained using emission fluorescence assays.

b

The experimentally determined changes in the heat capacity upon binding (Figure 3).

c

Structure-based calculations (see Eq. 7) using the average value from homology models based on the human S100B dimer binding to two peptides using PDB: 1MQ1 (43), 1MWN (40), and 3IQQ (44).

d

koff values obtained using fluorescence stopped-flow spectroscopy (Eq 9).

e

kon values were calculated using koff rate constants and the dissociation constants obtained from ITC.