Table 1.
Peptide | Kda μM | ΔCp, expb kJ·mol−1 K−1 | ΔCp, calcc kJ·mol−1 K−1 | koff (s−1)d | kon (1×107 M−1s−1)e |
---|---|---|---|---|---|
TRTK12 | 1.7 ± 0.1 (3 ± 1) | −1.2 ± 0.2 | −1.4 ± 0.1 | 53 ± 4 | 3.1 ± 0.3 |
TRTKM1 | 2.9 ± 1.0 (0.2 ± 0.1) | −1.2 ± 0.1 | −1.3 ± 0.1 | 34 ± 2 | 1.2 ± 0.1 |
TRTKM5 | 1.2 ± 0.4 (0.6 ± 0.6) | −1.0 ± 0.1 | −1.2 ± 0.1 | 66 ± 7 | 5.5 ± 1.9 |
TRTKM6 | 1.3 ± 0.6 (5 ± 1) | −1.3 ± 0.1 | −1.5 ± 0.1 | 31 ± 1 | 6.6 ± 1.0 |
TRTKM9 | 1.7 ± 0.1 (2 ± 1) | −1.5 ± 0.1 | −1.5 ± 0.1 | 53 ± 8 | 3.1 ± 0.5 |
TRTKM10 | 3.4 ± 1.0 (1 ± 0.1) | −1.0 ± 0.1 | −1.1 ± 0.1 | 36 ± 8 | 1.1 ± 0.4 |
TRTKM11 | 3.8 ± 1.0 (10 ± 3) | −1.6 ± 0.2 | −1.3 ± 0.1 | n.a. | n.a. |
Dissociation constants obtained using ITC. Values in parentheses were obtained using emission fluorescence assays.
The experimentally determined changes in the heat capacity upon binding (Figure 3).
Structure-based calculations (see Eq. 7) using the average value from homology models based on the human S100B dimer binding to two peptides using PDB: 1MQ1 (43), 1MWN (40), and 3IQQ (44).
koff values obtained using fluorescence stopped-flow spectroscopy (Eq 9).
kon values were calculated using koff rate constants and the dissociation constants obtained from ITC.