Table 5.
Peptide | Kda μM | ΔCp, expb kJ·mol−1·K−1 | ΔCp, calcc kJ·mol−1·K−1 | koff (s−1)d | kon (1×107 M−1·s−1)e |
---|---|---|---|---|---|
TRTK12 | 5.1 ± 0.3 (11 ± 1) | −1.1 ± 0.1 | −1.7 ± 0.1 | 286 ± 43f | 5.6 ± 0.9f |
TRTKM1 | 2.0 ± 0.5 (7 ± 3) | −0.9 ± 0.1 | −1.4 ± 0.1 | 135 ± 18 | 6.8 ± 1.9 |
TRTKM5 | 56.2 ± 4.0 (100 ± 23) | −1.2 ± 0.1 | −1.5 ± 0.1 | - | - |
TRTKM6 | 7.4 ± 1.0 (16 ± 4) | −0.9 ± 0.1 | −1.6 ± 0.1 | - | - |
TRTKM9 | 7.1 ± 0.5 (30 ± 10) | −1.0 ± 0.1 | −1.7 ± 0.1 | - | - |
TRTKM10 | 43.1 ± 3.9 n.d. | −1.3 ± 0.1 | −1.3 ± 0.1 | 32 ± 11g | 0.07 ± 0.03g |
TRTKM11 | 31.7 ± 0.5 n.d. | −1.8 ± 0.1 | −1.5 ± 0.1 | 151 ± 25h | 0.6 ± 0.1h |
Dissociation constants obtained using ITC. Values in parentheses were obtained using emission fluorescence assays.
The experimentally determined changes in the heat capacity upon binding (Figure 3).
Structure-based calculations (see Eq. 7) using the average value from homology models based on the human S100P dimer binding to two peptides using PDB:3IQQ (44).
koff value obtained using fluorescence stopped-flow spectroscopy (Eq 9).
kon values were calculated using the koff rate constants and the dissociation constants obtained from ITC.
koff value is within error of the dead-time, but is consistent with the temperature-dependent slope of the rate constant.
koff value was measured at 5°C. kon value was calculated for the corresponding temperature.
koff value was measured at 20°C. kon value was calculated for the corresponding temperature.