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. Author manuscript; available in PMC: 2014 Aug 27.
Published in final edited form as: Biochemistry. 2013 Aug 15;52(34):10.1021/bi400788s. doi: 10.1021/bi400788s

Table 5.

Summary of the dissociation constants, the changes in the heat capacity upon binding, and the kinetic rate constants of the TRTK12 wild-type peptide and alanine variants binding to S100P at 25°C.

Peptide Kda μM ΔCp, expb kJ·mol−1·K−1 ΔCp, calcc kJ·mol−1·K−1 koff (s−1)d kon (1×107 M−1·s−1)e
TRTK12 5.1 ± 0.3 (11 ± 1) −1.1 ± 0.1 −1.7 ± 0.1 286 ± 43f 5.6 ± 0.9f
TRTKM1 2.0 ± 0.5 (7 ± 3) −0.9 ± 0.1 −1.4 ± 0.1 135 ± 18 6.8 ± 1.9
TRTKM5 56.2 ± 4.0 (100 ± 23) −1.2 ± 0.1 −1.5 ± 0.1 - -
TRTKM6 7.4 ± 1.0 (16 ± 4) −0.9 ± 0.1 −1.6 ± 0.1 - -
TRTKM9 7.1 ± 0.5 (30 ± 10) −1.0 ± 0.1 −1.7 ± 0.1 - -
TRTKM10 43.1 ± 3.9 n.d. −1.3 ± 0.1 −1.3 ± 0.1 32 ± 11g 0.07 ± 0.03g
TRTKM11 31.7 ± 0.5 n.d. −1.8 ± 0.1 −1.5 ± 0.1 151 ± 25h 0.6 ± 0.1h
a

Dissociation constants obtained using ITC. Values in parentheses were obtained using emission fluorescence assays.

b

The experimentally determined changes in the heat capacity upon binding (Figure 3).

c

Structure-based calculations (see Eq. 7) using the average value from homology models based on the human S100P dimer binding to two peptides using PDB:3IQQ (44).

d

koff value obtained using fluorescence stopped-flow spectroscopy (Eq 9).

e

kon values were calculated using the koff rate constants and the dissociation constants obtained from ITC.

f

koff value is within error of the dead-time, but is consistent with the temperature-dependent slope of the rate constant.

g

koff value was measured at 5°C. kon value was calculated for the corresponding temperature.

h

koff value was measured at 20°C. kon value was calculated for the corresponding temperature.