Table 4.
Table of D. melanogaster SNPs
| Chr | Position | Ref. | Seq (%) | # Seq | A | C | G | T |
|---|---|---|---|---|---|---|---|---|
| 2LHet | 20035 | C | G (88.9) | 9 | 0 | 0 | 8 | 1 |
| 2L | 16149 | A | T (88.2) | 17 | 0 | 2 | 0 | 15 |
| 2RHet | 19519 | G | T (85.71) | 14 | 0 | 0 | 2 | 12 |
| 2R | 22744 | C | A (81.25) | 16 | 13 | 0 | 3 | 0 |
| 3LHet | 114047 | G | A (80) | 10 | 8 | 0 | 2 | 0 |
| 3L | 57760 | C | A (81.48) | 27 | 22 | 4 | 1 | 0 |
| 3RHet | 39553 | G | T (77.8) | 9 | 0 | 0 | 2 | 7 |
| 3R | 7971 | A | C (75) | 8 | 2 | 6 | 0 | 0 |
| 4 | 22103 | T | A (75) | 8 | 6 | 0 | 0 | 2 |
| dmel_mit | 1077 | A | G (93.1) | 101 | 3 | 0 | 94 | 4 |
| Uextra | 8625 | G | C (83.3) | 12 | 0 | 10 | 2 | 0 |
| U | 45631 | G | A (75) | 8 | 6 | 0 | 2 | 0 |
| X | 8296 | C | T (88.9) | 36 | 0 | 3 | 1 | 32 |
| YHet | 44048 | T | A (76.5) | 17 | 13 | 0 | 0 | 4 |
This is a partial table of the much larger tables in the online Supplementary materials (Suppl. Tables S4–S15). Chr, chromosome on which the SNP is located. Total Number, the number of SNPs in the indicated chromosome region; Position, sequence location based on D. melanogaster Release 5.3, Ref, the sequence from the reference genome (y1; cn1 bw1 sp1). Seq(%), the percentage of SNP called in the w1118; iso-2; iso-3 sequence. #Seq, the number of times this nucleotide was sequenced. A, C, G, T, the number of times this sequence was called for all 4 bases.