Table 3.
Summary of conserved syntenic blocks between catfish linkage groups and zebrafish chromosomes
| Group | Total length spanned (Kb) | No. of syntenies | Ave. size of the synteny (Kb) | Max. size of the synteny (Kb) | N50 of the synteny (Kb) | No. of genes involved | Ave. gene number/synteny |
|---|---|---|---|---|---|---|---|
| LG1 |
39,522 |
105 |
361 |
1,997 |
1,276 |
577 |
6 |
| LG2 |
11,105 |
54 |
206 |
942 |
340 |
202 |
5 |
| LG3 |
26,165 |
93 |
281 |
1,475 |
519 |
439 |
5 |
| LG4 |
21,282 |
65 |
327 |
2,091 |
854 |
335 |
6 |
| LG5 |
36,292 |
80 |
454 |
3,189 |
964 |
503 |
8 |
| LG6 |
36,722 |
102 |
360 |
2,835 |
810 |
570 |
7 |
| LG7 |
21,884 |
48 |
456 |
2,341 |
984 |
319 |
8 |
| LG8 |
26,601 |
92 |
289 |
3,269 |
631 |
434 |
5 |
| LG9 |
27,314 |
66 |
414 |
3,702 |
932 |
431 |
8 |
| LG10 |
15,589 |
41 |
380 |
3,247 |
709 |
277 |
9 |
| LG11 |
26,953 |
72 |
374 |
4,995 |
1,121 |
475 |
8 |
| LG12 |
22,483 |
79 |
285 |
2,731 |
521 |
389 |
6 |
| LG13 |
29,613 |
78 |
380 |
2,363 |
707 |
472 |
8 |
| LG14 |
13,468 |
43 |
313 |
2,631 |
749 |
231 |
6 |
| LG15 |
27,758 |
78 |
356 |
2,466 |
632 |
453 |
8 |
| LG16 |
36,037 |
105 |
343 |
1,803 |
684 |
535 |
5 |
| LG17 |
35,452 |
92 |
385 |
1,651 |
658 |
464 |
6 |
| LG18 |
19,451 |
68 |
286 |
1,536 |
526 |
333 |
6 |
| LG19 |
20,872 |
36 |
580 |
3,201 |
1,604 |
269 |
9 |
| LG20 |
31,788 |
73 |
435 |
3,800 |
844 |
456 |
9 |
| LG21 |
23,200 |
56 |
414 |
3,730 |
835 |
315 |
6 |
| LG22 |
28,266 |
69 |
410 |
2,233 |
842 |
431 |
7 |
| LG23 |
11,486 |
47 |
244 |
977 |
465 |
221 |
5 |
| LG24 |
24,625 |
46 |
535 |
2,529 |
1,075 |
363 |
10 |
| LG25 |
23,276 |
79 |
295 |
1,539 |
759 |
407 |
6 |
| LG26 |
18,055 |
46 |
393 |
3,541 |
803 |
256 |
7 |
| LG27 |
15,045 |
35 |
430 |
2,465 |
1,103 |
204 |
7 |
| LG28 |
26,602 |
63 |
422 |
2,382 |
1,010 |
389 |
8 |
| LG29 |
5,860 |
32 |
183 |
705 |
345 |
126 |
5 |
| Total | 702,766 | 1,943 | 10,876 |