Table 7.
Transcription factor binding sites (and number per gene) for selected genes noted to alter transcription in response to stretch, BIRB796, or stretch + BIRB796
TF binding sites | AREG | EREG | IL1RL1 | PTGS2 | MYH3 | MYBPC1 | MAPK3K6 | FOSL1 | MAPK12 | FGF8 | REG3A |
---|---|---|---|---|---|---|---|---|---|---|---|
AP-1 (Lal et al. 2008; Lee et al. 2011) | 3 | 3 | 1 | 2 | 2 | 5 | 2 | 2 | |||
AREB6 | 1 | 1 | 1 | 1 | 4 | 1 | 2 | 3 | 1 | ||
ATF-2 (Monzen et al. 2001; Li et al. 2011) | 1 | 1 | 2 | 1 | |||||||
cdc5 | 1 | 1 | 1 | 1 | |||||||
C-Jun (Lal et al. 2008; Lesman et al. 2010) | 2 | 1 | 2 | 2 | 5 | 1 | 7 | ||||
CREB (Li et al. 1999; Stevens et al. 2009; Streicher et al. 2010; Turner et al. 2010) | 1 | 2 | 3 | 5 | 7 | 6 | |||||
Evi-1 (Sengupta et al. 2013) | 2 | 1 | 1 | 1 | 2 | 2 | 1 | ||||
FOXD1 (Liang and Molkentin 2003; Liang et al. 2010) | 2 | 1 | 2 | 1 | |||||||
FOXJ2 (Liang and Molkentin 2003; Liang et al. 2010) | 1 | 1 | 1 | 2 | 1 | 4 | |||||
GATA-1 | 2 | 2 | 2 | 3 | 6 | 2 | 6 | ||||
GATA-2 | 1 | 1 | 1 | 1 | |||||||
GATA-3 | 2 | 1 | 1 | 1 | |||||||
HOXA9 (Markou et al. 2004) | 1 | 1 | 1 | 3 | |||||||
IRF-1 (Maron et al. 2001) | 1 | 1 | 1 | ||||||||
MEF-2A (Park et al. 2008; Rubbens et al. 2009) | 2 | 2 | 5 | 6 | |||||||
MyoD | 1 | 1 | 2 | 3 | |||||||
NF-kB | 1 | 1 | 4 | 2 | |||||||
Nkx2.5 | 1 | 2 | 1 | 1 | 2 | 2 | 2 | 1 | |||
p300 (Nakamura et al. 2013) | 2 | 1 | 1 | ||||||||
p53 | 1 | 1 | 1 | 3 | 4 | 1 | 4 | ||||
Pax-4a | 1 | 1 | 1 | 2 | 1 | 3 | 4 | 1 | 7 | ||
Pax-6 | 1 | 1 | 2 | 2 | 4 | 2 | 2 | 1 | |||
POU2F1 | 3 | 1 | 1 | 3 | 1 | 1 | 7 | ||||
POU3F2 | 1 | 1 | 2 | ||||||||
PPAR (Schaaf et al. 2011; Schueler et al. 2012; Sekiya et al. 2013) | 1 | 1 | 1 | 1 | 5 | 2 | 2 | ||||
SEF-1 | 1 | 1 | 3 | 1 | 1 | ||||||
SREBP-1a (Seko et al. 1999) | 1 | 1 | 2 | 1 | 3 | 1 | 1 | 1 | 1 | ||
SREBP-1b (Seko et al. 1999) | 1 | 1 | 2 | 1 | 3 | 1 | 1 | 1 | 1 | ||
SREBP-1c (Seko et al. 1999) | 1 | 1 | 2 | 1 | 3 | 1 | 1 | 1 | 1 | ||
SRF | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 4 | |||
STAT3 (Monzen et al. 2001; Nadruz et al. 2005) | 1 | 1 | |||||||||
STAT5A (Kuma et al. 2005; Kurazumi et al. 2011; Sato et al. 2011) | 1 | 1 | 2 | 1 | 3 | 1 | 3 | 2 | |||
YY1 (Qiu et al. 2008; Puthanveetil et al. 2013) | 1 | 1 | 1 | 5 |