Table 4. BLAST results for repeat sequences among the 18 species.
Repeat name | Group no. | Z. mays | S. bicolor | T. aestivum | O. sativa | V. vinifera | M. indica | G. max | R. communis | A. thaliana | B. napus | G. hirsutum | C. sativus | C. arabica | H. annuus | O. europaea | P. ginseng | N. tabacum | P. occidentalis |
R1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 3 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 2 | 1 | |
R2 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 2 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 1 |
R3 | 4 | 1 | |||||||||||||||||
R4 | 4 | 1 | |||||||||||||||||
R5 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 |
R6 | 1 | 2 | 2 | 2 | 3 | 4 | 2 | 5 | 1 | 1 | 2 | 3 | 4 | 2 | 1 | 1 | 2 | 4 | |
R7 | 1 | 1 | 1 | 1 | 1 | 1 | 3 | 1 | 3 | 1 | 1 | 4 | 2 | 1 | 1 | 2 | 1 | ||
R8 | 3 | 1 | 1 | 1 | 1 | ||||||||||||||
R9 | 3 | 2 | 2 | 2 | 2 | 2 | |||||||||||||
R10 | 4 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
R11 | 2 | 2 | 2 | 2 | 4 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | |||||
R12 | 4 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
R13 | 4 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
R14 | 4 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
R15 | 2 | 2 | 2 | 2 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 2 | 4 | 2 | ||||
R16 | 3 | 2 | 2 | 4 | 2 | 2 | 8 | 2 | |||||||||||
R17 | 4 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Note: – represents no hits. Sesame repeat sequences were used as the query. The number in the table indicates the number of hits of a repeat in the cp genome for a given species.