Table 2. Nucleotide content of 41 TTSuV2 genomes (%).
No. | T(U) | T(U)3S | C | C3S | A | A3S | G | G3S | GC | GC3S | ENC |
---|---|---|---|---|---|---|---|---|---|---|---|
1 | 20.54 | 27.81 | 21.41 | 33.11 | 36.33 | 41.96 | 21.72 | 28.10 | 45.0 | 46.0 | 54.55 |
2 | 20.22 | 26.48 | 22.54 | 32.61 | 35.60 | 43.24 | 21.64 | 26.19 | 45.9 | 45.3 | 55.20 |
3 | 20.40 | 27.06 | 22.41 | 33.55 | 34.88 | 39.46 | 22.31 | 29.01 | 46.7 | 48.0 | 57.31 |
4 | 20.40 | 27.06 | 22.41 | 33.55 | 34.88 | 39.46 | 22.31 | 29.01 | 46.7 | 48.0 | 57.31 |
5 | 20.75 | 27.89 | 21.67 | 33.33 | 35.44 | 40.17 | 22.14 | 27.76 | 45.6 | 46.5 | 57.86 |
6 | 20.44 | 27.91 | 21.83 | 33.41 | 35.90 | 40.40 | 21.83 | 28.33 | 45.5 | 46.6 | 58.18 |
7 | 20.50 | 28.07 | 21.57 | 32.89 | 35.74 | 40.52 | 22.19 | 28.17 | 45.6 | 46.2 | 58.16 |
8 | 20.39 | 27.91 | 21.88 | 33.41 | 35.90 | 40.40 | 21.83 | 28.33 | 45.6 | 46.6 | 58.18 |
9 | 20.34 | 27.31 | 21.37 | 33.26 | 36.47 | 41.72 | 21.83 | 28.47 | 45.1 | 46.5 | 53.76 |
10 | 20.03 | 27.63 | 21.67 | 32.89 | 36.47 | 41.69 | 21.83 | 27.25 | 45.6 | 45.8 | 56.04 |
11 | 20.03 | 27.03 | 21.52 | 33.19 | 36.11 | 41.33 | 22.34 | 27.88 | 45.8 | 46.4 | 55.66 |
12 | 20.96 | 28.54 | 21.47 | 32.68 | 35.44 | 39.91 | 22.14 | 28.13 | 45.4 | 46.2 | 58.18 |
13 | 21.50 | 27.29 | 21.34 | 31.99 | 37.02 | 44.04 | 20.15 | 28.54 | 43.4 | 45.1 | 54.69 |
14 | 19.93 | 28.05 | 21.52 | 33.71 | 36.67 | 41.83 | 21.88 | 27.99 | 45.4 | 46.1 | 55.37 |
15 | 20.44 | 28.28 | 21.06 | 34.39 | 37.03 | 41.31 | 21.47 | 27.62 | 44.6 | 46.5 | 55.04 |
16 | 19.81 | 28.28 | 21.83 | 33.71 | 36.58 | 40.40 | 21.78 | 27.92 | 45.8 | 46.5 | 57.14 |
17 | 20.09 | 26.23 | 21.79 | 34.75 | 36.17 | 41.24 | 21.95 | 29.17 | 46.1 | 48.1 | 57.56 |
18 | 19.88 | 28.41 | 21.73 | 33.33 | 36.72 | 41.74 | 21.67 | 26.97 | 45.5 | 45.5 | 56.51 |
19 | 20.24 | 28.07 | 21.62 | 32.68 | 35.95 | 40.35 | 22.19 | 29.02 | 45.8 | 46.6 | 57.03 |
20 | 19.93 | 28.05 | 21.62 | 33.71 | 36.52 | 41.65 | 21.93 | 27.86 | 45.5 | 46.1 | 55.55 |
21 | 20.29 | 27.95 | 21.57 | 32.53 | 35.90 | 40.35 | 22.24 | 28.78 | 45.9 | 46.5 | 56.86 |
22 | 20.40 | 27.33 | 20.87 | 31.89 | 37.90 | 43.16 | 20.82 | 30.00 | 44.2 | 45.9 | 57.78 |
23 | 20.66 | 26.29 | 21.23 | 33.71 | 36.12 | 40.80 | 22.00 | 30.26 | 45.2 | 48.0 | 56.84 |
24 | 20.34 | 28.48 | 21.06 | 33.86 | 36.88 | 41.31 | 21.73 | 28.06 | 44.8 | 46.4 | 54.86 |
25 | 21.81 | 28.51 | 20.92 | 31.63 | 36.86 | 45.07 | 20.40 | 26.82 | 42.9 | 43.8 | 53.98 |
26 | 19.99 | 26.29 | 22.00 | 35.06 | 36.01 | 40.92 | 22.00 | 29.10 | 46.3 | 48.2 | 57.24 |
27 | 20.59 | 28.16 | 21.57 | 33.92 | 36.07 | 40.77 | 21.78 | 28.06 | 45.3 | 46.7 | 54.41 |
28 | 21.09 | 27.25 | 21.34 | 31.21 | 37.42 | 44.59 | 20.16 | 28.12 | 43.4 | 44.4 | 55.97 |
29 | 20.56 | 26.15 | 21.84 | 33.63 | 35.55 | 41.16 | 22.05 | 28.95 | 46.1 | 47.5 | 56.81 |
30 | 20.34 | 28.28 | 21.11 | 34.39 | 36.93 | 40.99 | 21.62 | 27.79 | 44.9 | 46.7 | 54.93 |
31 | 21.45 | 26.81 | 21.14 | 31.21 | 36.90 | 43.72 | 20.52 | 28.50 | 43.7 | 44.9 | 56.01 |
32 | 20.08 | 26.67 | 21.57 | 33.11 | 36.31 | 42.54 | 22.03 | 28.07 | 45.3 | 46.0 | 56.14 |
33 | 20.38 | 29.12 | 21.57 | 32.28 | 37.31 | 43.51 | 20.74 | 26.85 | 44.7 | 44.1 | 56.39 |
34 | 20.77 | 27.27 | 21.13 | 31.82 | 37.64 | 42.89 | 20.46 | 30.56 | 44.1 | 46.2 | 56.61 |
35 | 21.19 | 29.36 | 21.19 | 30.91 | 37.16 | 43.94 | 20.47 | 26.42 | 43.7 | 43.2 | 56.11 |
36 | 21.18 | 28.47 | 20.40 | 31.48 | 37.85 | 42.66 | 20.56 | 31.39 | 43.5 | 45.9 | 57.41 |
37 | 21.08 | 28.37 | 20.46 | 31.63 | 38.21 | 43.22 | 20.25 | 31.22 | 43.2 | 45.8 | 56.27 |
38 | 20.43 | 27.33 | 21.47 | 33.78 | 36.38 | 40.67 | 21.72 | 29.15 | 45.2 | 47.3 | 54.02 |
39 | 19.88 | 26.93 | 21.93 | 33.55 | 36.67 | 42.83 | 21.52 | 27.23 | 45.4 | 45.8 | 54.49 |
40 | 20.40 | 28.92 | 21.64 | 32.96 | 37.35 | 43.12 | 20.61 | 26.59 | 44.4 | 44.4 | 56.01 |
41 | 20.14 | 27.11 | 21.79 | 33.78 | 36.27 | 41.63 | 21.79 | 28.85 | 45.7 | 47.1 | 56.25 |
mean | 20.48 | 27.67 | 21.52 | 33.04 | 36.46 | 41.77 | 21.53 | 28.35 | 45.09 | 46.18 | 56.21 |