Table 3. RSCU values of codons in TTSuV2, TTSuV1 and swine.a .
AA b | Codon | RSCU | TTSuV1 | SUS c | AA b | Codon | RSCU | TTSuV1 | SUS c |
---|---|---|---|---|---|---|---|---|---|
Phe | UUU | 1.00 | 0.76 | 1.11 | Tyr | UAU | 1.10 | 1.10 | 1.12 |
UUC | 1.00 | 1.24 | 0.89 | UAC | 0.90 | 0.90 | 0.82 | ||
Leu | UUA | 1.56 | 1.38 | 0.65 | Ala | GCU | 0.81 | 1.20 | 1.36 |
UUG | 0.85 | 1.21 | 0.85 | GCC | 0.94 | 1.15 | 1.22 | ||
CUU | 0.90 | 0.49 | 1.20 | GCA | 1.51 | 1.15 | 1.05 | ||
CUC | 1.03 | 0.71 | 1.12 | GCG | 0.74 | 0.50 | 0.37 | ||
CUA | 1.23 | 0.99 | 0.56 | His | CAU | 0.91 | 0.60 | 0.97 | |
CUG | 0.44 | 1.22 | 1.62 | CAC | 1.09 | 1.40 | 1.03 | ||
Ile | AUU | 0.53 | 0.57 | 1.06 | Gln | CAA | 1.01 | 0.90 | 0.85 |
AUC | 0.95 | 1.02 | 1.11 | CAG | 0.99 | 1.10 | 1.15 | ||
AUA | 1.51 | 1.41 | 0.83 | Asn | AAU | 0.97 | 1.01 | 1.02 | |
Val | GUU | 0.71 | 0.62 | 1.11 | AAC | 1.03 | 0.99 | 0.98 | |
GUC | 0.56 | 0.40 | 0.96 | Lys | AAA | 1.26 | 1.22 | 1.21 | |
GUA | 1.74 | 1.28 | 0.64 | AAG | 0.74 | 0.78 | 0.79 | ||
GUG | 0.99 | 1.71 | 1.29 | Asp | GAU | 0.67 | 0.74 | 0.95 | |
Ser | UCU | 0.82 | 0.75 | 1.34 | GAC | 1.33 | 1.26 | 1.05 | |
UCC | 1.35 | 0.72 | 1.20 | Glu | GAA | 1.26 | 1.08 | 1.09 | |
UCA | 1.65 | 1.49 | 1.00 | GAG | 0.74 | 0.92 | 0.91 | ||
UCG | 0.53 | 0.56 | 0.31 | Cys | UGU | 0.67 | 0.55 | 1.06 | |
AGU | 0.55 | 1.39 | 0.93 | UGC | 1.33 | 1.45 | 0.94 | ||
AGC | 1.10 | 1.10 | 1.22 | Arg | CGU | 0.58 | 0.51 | 0.55 | |
Pro | CCU | 1.58 | 1.21 | 1.26 | CGC | 0.39 | 0.93 | 0.65 | |
CCC | 0.25 | 0.72 | 1.08 | CGA | 0.50 | 0.63 | 0.54 | ||
CCA | 1.48 | 1.11 | 1.23 | CGG | 0.64 | 0.55 | 0.74 | ||
CCG | 0.69 | 0.96 | 0.43 | AGA | 2.16 | 1.34 | 1.86 | ||
Thr | ACU | 1.31 | 1.01 | 1.19 | AGG | 1.73 | 2.05 | 1.67 | |
ACC | 1.01 | 1.23 | 1.23 | Gly | GGU | 0.49 | 0.74 | 0.81 | |
ACA | 1.06 | 1.21 | 1.24 | GGC | 0.66 | 0.99 | 1.08 | ||
ACG | 0.63 | 0.55 | 0.34 | GGA | 2.07 | 1.31 | 1.18 | ||
GGG | 0.78 | 0.95 | 0.94 |
The preferred codons for each amino acid is displayed in bold.
AA is the abbreviation of Amino Acid.
SUS is swine.