Table 6.

Genes differentially expressed and detected in only one congenic strain compared with the others

	Increased		Decreased
Strain	Expression	Detection	Expression	Detection
Cia3d	Adipor2, Ccdc61, Cpt1c, Fam193b, Hsf4, Khk, Pik3r6, Rock2, Scnn1b, Vgll4, Zfp579	Ankrd55, Col4a3, Fam5b, Frs3, Gfra4, Gjb1, Gp9, Heatr8, Hoxa9l, Prdm9, RGD1566314, Scn8a, Toag1, Ybx2, Zfp651	Eef1b2l, Eif2 s1, Fam114a1l1, Fbln1, Hsp90aa1, LOC 689408, Npm1, Pabpc1, Pah, Pdia3, Ppih, Prss35, Ptma, RGD1562725, RGD1563124, RGD1565900, Spred1, Wdfy1	A2m, Cysltr1, LOC290595, Nipsnap3b, Pabpc1l2b, Ptn, Zfp367
Cia5a	Abhd5, Abi1, Adamts5, Aldh9a1, Angpt2, Arhgap29, Cald1, Chmp7, Crim1, Ddx21, Dock9, Dstnl1, Eef1a1, Eif1a, Eif4ebp2, Epas1, Fam43a, Fez2, Ggta1, Itga1, LOC498453, LOC688922, Mapre1, Mcam, MGC105560, Msn, Mtmr6, Nckap1, Pik3r1, Pls3, Ppp3cb, RGD1308874, RGD1561778, RGD1564400, RGD1565496, Sept7, Slc31a2, Tek, Tmem158, Tmem87a, Tspan4, Ube2q2, Wdr45l, Yy1, Zdhhc20, Zfp235, Zfp36l2, Zmpste24, Zmynd11	Aanat, Acss3, Aif1l, Ankrd13c, Atg13, Atp13a3, Bmi1, Bsdc1, Ccdc79, Cdh5, Ctu1, Ddrgk1, D oc2b, Enpp4, Fbxw11, Foxn3, Gab1, Gabpb2, Ifit2, Kitlg, LOC497978, LOC679565, LOC682571, Mki67ip, Neil2, Nek7, Nxt2, Pex10, Pik3r3, Plekhm2, Ppp1r15b, Prok1, Prr14l, Prrg1, Rassf3, RGD1309104, RGD1561481, Rmnd5a, Stag2, Tbx18, Tmem182, Tril, Twsg1, V gll3, Xxylt1	Atxn7l2, Bmp1, Cercam, Ctrl, Fbf1, Nebl, Peli3, Pla2 g2d, RGD1308106, RGD1309310, Stat6, Trerf1, Tut1	C5, AceII, Lhx9, Tns3, Ccnt1, Olr150, Rtp3, Phactr1, Fdxr, Tchp, Lrp4, LOC299458, RGD1307525, RGD1560663, RGD1564313, Stc2, Hapln3, Col7a 1, LOC499530, Mcf2, Mef2d, Chrna7, Magi1
Cia25	Anp32a, C1 galt1c1, Ccdc84, Cep57, Cnn1, Cpeb2, Csrp1, Eif2ak4, Emp2, Gstp1, Gulp1, Ik, LOC259246, LOC301444, LOC361117, LOC498544, LOC501441, LOC503325, LOC684681, LOC684988, LOC689031, Marveld1, Mcfd2, Med31, Meox2, Mospd2, Mpdz, Myl12b, Nfib, Nme7, Nptn, Numa1, Pgrmc1, Pon2, Pura, RGD1305721, RGD1559566, RGD1560186, RGD1561310, RGD1562469, RGD1562905, RGD1563431, RGD1563551, RGD1564055, RGD1565370, RGD1565806, Rpl30, Rsf1, Shox2, Skiv2l2, Slc12a2, Slc44a1, Vamp2, Ywhag, Zfp672	Mccc2, Atpif1, Nicn1, Hmgb1, Shbg, Rnf113a2, Krt1-5, Tcte4	Actb, Agap3, Ahr, Akt1, Atf1, B3 gnt9, Cap1, Cpne3, Cpox, Cs, Ctnnb1, Dpy19l1, Hip1, LOC308990, LOC500959, Lrat, Nudcd1, Obfc2a, Ppp1r18, Rab7b, Rab8a, Rftn1, rnf141, Shc1, Slc35e3, Stat1, Tm6 sf1, Tmem165, Tpcn2, Tpm4, Ube2q2, Wbscr22, Wdr45l, Yy1	Abcb8, Abi3, Acap1, Adcy10, Arid5a, Atp11a, Camkmt, Cbl, Ccdc99, Ccpg1, Cd4, Cdca7, Ch25 h, Cxcl10, Det1, Dmxl1, Dusp18, Elf1, G2e3, Gbp5, Gga2, Hvcn1, Hyal3, Il13ra1, Ireb2, Klhl6, Leng4, Madd, Map3k 14, Mcm3, Mfsd11, Mgrn1, Nadkd1, Olr211, Olr987, Pask, Ptprc, RGD1306151, RGD1307704, RGD1563701, Rpl5, Spi1, Swsap1, Tll1, Tmem173, Tsc1, Unc45b, Usp24, Vom2r30, Zbed4
Cia10	(no genes)	Aifm3, Pcnxl2, Tff3	(no genes)	Srp54a