Table 2. Summary statistics of 11 polymorphic microsatellite loci in 30 isolates of Anisogramma anomala.
Marker | Motif | Major allele frequency | Sample size | # of alleles | Gene diversitya | Polymorphism information contentb |
---|---|---|---|---|---|---|
Aa00170 | (GTT)n | 0.6071 | 30 | 3 | 0.5026 | 0.4072 |
Aa00689 | (TCA)n | 0.5417 | 30 | 4 | 0.5868 | 0.5146 |
Aa00940 | (TTA)n | 0.6667 | 30 | 2 | 0.4444 | 0.3457 |
Aa01096 | (TTTA)n | 0.8519 | 30 | 2 | 0.2524 | 0.2205 |
Aa01290 | (TAA)n | 0.6667 | 30 | 2 | 0.4444 | 0.3457 |
Aa01430 | (TAC)n | 0.8462 | 30 | 2 | 0.2604 | 0.2265 |
Aa02342 | (TTC)n | 0.4000 | 30 | 4 | 0.6733 | 0.6111 |
Aa02555 | (TTA)n | 0.8077 | 30 | 2 | 0.3107 | 0.2624 |
Aa02768 | (AAT)n | 0.5333 | 30 | 2 | 0.4978 | 0.3739 |
Aa03169 | (ATA)n | 0.9259 | 30 | 2 | 0.1372 | 0.1278 |
Aa16574 | (CT)n | 0.4138 | 30 | 4 | 0.6540 | 0.5852 |
Gene diversity, also referred to as expected heterozygosity, is the probability that two randomly chosen alleles from the population are different. It was calculated according to Weir [37].
Polymorphism information content is a modification of gene diversity, from which it subtracts the additional probability that an individual does not contribute information in a linkage analysis. It was calculated according to Botstein, et al. [38].