Table 1.
Reference sequences of Orientia tsutsugamushi used in the phylogenetic analysis
| Isolate | Source | Accession no. | Country | Year | Length (bp) |
|---|---|---|---|---|---|
| Kato |
Human |
MM63382 |
Japan |
1955 |
1590 |
| Taiwan CDC Gilliam |
- |
DQ485289 |
Taiwan |
- |
1860 |
| Karp |
Human |
M33004 |
New Guinea |
1943 |
1599 |
| Kuroki |
Human |
M63380 |
Japan |
1981 |
1599 |
| Kawasaki |
Human |
M63383 |
Japan |
1981 |
1569 |
| TA678 |
Rattus rattus |
U19904 |
Thailand |
1963 |
1548 |
| TA763 |
R. rattus |
U80636 |
Thailand |
1963 |
1581 |
| TA686 |
Tupaia glis |
U80635 |
Thailand |
1963 |
1599 |
| TA716 |
Menetes berdmorei |
U19905 |
Thailand |
1963 |
1575 |
| Shimokoshi |
Human |
M63381 |
Japan |
1980 |
1565 |
| Boryong |
Human |
L04956 |
South Korea |
1998 |
1602 |
| HSB1 |
Rodent |
AF302983 |
Japan |
1996-1997 |
1454 |
| Yonchon |
Human |
U19903 |
South Korea |
1989 |
1551 |
| LX-1 |
Leptotrombidium spp. |
AF173042 |
Japan |
1986 |
1445 |
| Lc-1 |
L. chiangraiensis |
FJ374771 |
Thailand |
2008 |
1590 |
| LA-1 |
L. arenicola |
AF173049 |
Malaysia |
1993 |
1432 |
| LF-1 |
L. fletcheri |
AF173050 |
Malaysia |
1993 |
1428 |
| Fuji |
L. fuji |
AF201834 |
Japan |
1998 |
1431 |
| Sxh951 |
Human |
AF050669 |
China |
1998 |
1544 |
| Neimeng-65 |
Cricetulus barabansis |
DQ514319 |
China |
2004-2005 |
1535 |
| Shandong-XDM2 |
L. scutellare |
DQ514320 |
China |
1996 |
1591 |
| CHL |
Human |
JX202567 |
China |
2011 |
658 |
| ZQL |
Human |
JX202576 |
China |
2011 |
657 |
| ZZF |
Human |
KC456647 |
China |
2011 |
655 |
| STAD10-24 |
R. norvegicus |
JX202582 |
China |
2010 |
656 |
| STAD10-792 |
Mus musculus |
JX202583 |
China |
2010 |
689 |
| TAXT11-1023 |
M. musculus |
JX202584 |
China |
2011 |
660 |
| TAXT11-1103 |
M. musculus |
JX202585 |
China |
2011 |
706 |
| TADY11-1168 |
M. musculus |
JX202586 |
China |
2011 |
676 |
| TADY12-0305 |
R. norvegicus |
JX202587 |
China |
2012 |
661 |
| TADY12-0307 |
M. musculus |
JX202588 |
China |
2012 |
660 |
| YN11-24 | C. barabansis | KC456651 | China | 2011 | 667 |