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. 2013 Jul 22;2:10. doi: 10.1186/2047-217X-2-10

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Copyright © 2013 Bradnam et al.; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Optical map results for snake assemblies. Total height of each bar represents total length of scaffolds that were suitable for optical map analysis. Dark blue portions represent ‘level 1 alignments’, sequences that were globally aligned in a restrictive manner. Light blue portions represent ‘level 2 alignments’, sequences that were globally aligned in a permissive manner. Orange portions represent ‘level 3 alignments’, sequences that were locally aligned. Assemblies are ranked in order of the total length of aligned sequence. Note: the SOAP assembly is sub-optimal due to use of mistakenly labeled 4 Kbp and 10 Kbp libraries (see Discussion).