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. 2013 Sep 8;14:20. doi: 10.1186/1471-2199-14-20

Table 1.

Pseudo attP sites in pig kidney PK15 cell line

Site Sequencea,b Identity to attP (%)c Genomic location Integration frequencyd
attP
CCCCAACTGGGGTAACCTTTGAGTTCTCTCAGTTGGGGG
100
 
 
5113
AAGGATTTGGATTTCATC TGT GTATGCTCAGTACTTTTT
18
Chr1, ﹢ , 114220089–114220127,Int.Ge
2/6 = 33%
5156
TGGATTTGGGTGCCACGG TGA CTCAGATGGGATGCCGGG
26
Chr7, ﹣ , 45581124–45581162,Int.G
2/6 = 33%
1015
GCCTGGTATCATCAAACA TTTATGGGATCTCTGCCATGT
23
Chr9, ﹣ , 42746366–42746404,Int.G
1/6 = 17%
2015 ATACCCCCAATATAGCTC TGAAATACCAATGGGTGTTCC 31 Chr3, ﹣ , 54698718–54698756,Int.G 1/6 = 17%

aThe TTG core in the wild-type attP site and similar core in pseudo attP site of pig genome are shown in bold.

bNucleotides identical to the wild-type site at that position are underlined.

cThe identity is calculated by Bioedit.

dIntegration frequency = recombination clones/total selected clones × 100%.

eInt.G, intergenic region.