Table 1.
Pseudo attP sites in pig kidney PK15 cell line
| Site | Sequencea,b | Identity to attP (%)c | Genomic location | Integration frequencyd |
|---|---|---|---|---|
| attP |
CCCCAACTGGGGTAACCTTTGAGTTCTCTCAGTTGGGGG |
100 |
|
|
| 5113 |
AAGGATTTGGATTTCATC TGT GTATGCTCAGTACTTTTT |
18 |
Chr1, ﹢ , 114220089–114220127,Int.Ge |
2/6 = 33% |
| 5156 |
TGGATTTGGGTGCCACGG TGA CTCAGATGGGATGCCGGG |
26 |
Chr7, ﹣ , 45581124–45581162,Int.G |
2/6 = 33% |
| 1015 |
GCCTGGTATCATCAAACA TTTATGGGATCTCTGCCATGT |
23 |
Chr9, ﹣ , 42746366–42746404,Int.G |
1/6 = 17% |
| 2015 | ATACCCCCAATATAGCTC TGAAATACCAATGGGTGTTCC | 31 | Chr3, ﹣ , 54698718–54698756,Int.G | 1/6 = 17% |
aThe TTG core in the wild-type attP site and similar core in pseudo attP site of pig genome are shown in bold.
bNucleotides identical to the wild-type site at that position are underlined.
cThe identity is calculated by Bioedit.
dIntegration frequency = recombination clones/total selected clones × 100%.
eInt.G, intergenic region.