Table 1. Mark frequency at each state revealed by the conditional random field (CRF) model on training data.
State | H3K36me3 | H4K20me1 | H3K4me1 | H3K4me2 | H3K4me3 | H3K9ac | H3K27ac | CTCF |
1 | 1 | 0 | 2 | 98 | 100 | 98 | 100 | 14 |
2 | 0 | 0 | 0 | 16 | 100 | 57 | 84 | 29 |
3 | 6 | 78 | 25 | 36 | 99 | 59 | 64 | 31 |
4 | 0 | 39 | 88 | 100 | 100 | 80 | 100 | 16 |
5 | 0 | 0 | 0 | 34 | 74 | 6 | 23 | 5 |
6 | 16 | 100 | 98 | 90 | 87 | 16 | 51 | 5 |
7 | 4 | 100 | 100 | 63 | 49 | 0 | 14 | 2 |
8 | 0 | 100 | 100 | 0 | 0 | 0 | 0 | 0 |
9 | 1 | 0 | 97 | 79 | 56 | 3 | 19 | 0 |
10 | 4 | 0 | 99 | 3 | 1 | 3 | 9 | 3 |
11 | 0 | 100 | 0 | 0 | 0 | 0 | 0 | 4 |
12 | 2 | 98 | 0 | 28 | 82 | 2 | 4 | 4 |
13 | 100 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
14 | 100 | 100 | 0 | 0 | 0 | 0 | 0 | 0 |
15 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |