Table 1.

Summary of the Number of Taxa, % of Gene Coverage, Analyses Performed, Models, and Partitions for Each Data Set

Data Set	Number of Taxa	% Gene Coverage	Analysis	Models	Partitions
nt123	19	64	MP	—	—
	19	64	ML	GTR-GAMMA	3: nt1, 2, 3
	19	64	ML (GT)	GTR-GAMMA	by gene
	19	64	iGTP (GT)	MDC, MDL, MD	—
	14	85	ML (R)	GTR-GAMMA	—
nt12	19	64	MP	—	—
	19	64	ML	GTR-GAMMA	2: nt1, 2
	14	85	ML (R)	GTR-GAMMA	—
nt3	19	64	MP	—	—
	19	64	ML	GTR-GAMMA	—
	14	85	ML (R)	GTR-GAMMA	—
Degen1	19	64	MP	—	—
	19	64	ML	GTR-GAMMA	3: nt1, 2, 3
	14	85	ML (R)	GTR-GAMMA	—
Degen1-nt3	19	64	MP	—	—
	19	64	ML	GTR-GAMMA	—
	14	85	ML (R)	GTR-GAMMA	—
Amino acid	19	64	ML	GAMMA JTT+F	—
	14	85	ML (R)	GAMMA JTT+F	—

Note.—MP analyses were conducted in TNT and ML analyses were conducted in RAxML unless otherwise noted. (GT) indicates a gene-tree analysis and (R) indicates a RADICAL analysis.