Table 1.
Protein Namea | AGI | α-Block | Evident SSDb | AabIDc | Syntelog | % Identity | Col-0 → Aabd |
---|---|---|---|---|---|---|---|
Core-structure formation | |||||||
UGT74C1 | AT2G31790 | A02N051 | TD | Aab37175 | Yes | 79.44 | 6 → 10 |
[UGT like] | AT1G05670 | A02N051 | TD | Aab31930 | Yes | 81.11 | 6 → 10 |
FMO-GSOX-2 | AT1G62540 | A03N117 | TD | Aab10869 | Yes | 76.6 | 11 → 8 |
[FMO like] | AT1G12130 | A03N117 | TD | Aab13543 | Yes | 65.09 | 11 → 8 |
CYP79F2 | AT1G16400 | A05N062 | TD | — | — | — | 8 → 9 |
CYP79C1 | AT1G79370 | A05N062 | GTD | Aab34143 | Yes | 76.8 | 8 → 9 |
SOT16 | AT1G74100 | A05N186 | TD | Aab14278 | Yes | 91.07 | 3 → 3 |
SOT17 | AT1G18590 | A05N186 | Aab19675 | Yes | 86.05 | 3 → 3 | |
SUR1 | AT2G20610 | A10N194 | Aab30136 | Yes | 89.15 | 3 → 2 | |
[SUR like] | AT4G28420 | A10N194 | TD | Aab31155 | Yes | 57.93 | 3 → 2 |
CYP79B2 | AT4G39950 | A10N257 | GTD | Aab17805 | Yes | 81.38 | 8 → 9 |
CYP79B3 | AT2G22330 | A10N257 | GTD | Aab19477 | Yes | 81.4 | 8 → 9 |
GGP1 | AT4G30530 | A10N314 | TD | Aab24374 | Yes | 87.6 | 5 → 5 |
[GGP like] | AT2G23960 | A10N314 | TD | Aab11021 | Yes | 61.38 | 5 → 5 |
GSTF11 | AT3G03190 | A12N102 | Aab14996 | Yes | 77.1 | 4 → 4 | |
[GSTF12] | AT5G17220 | A12N102 | Aab14791 | Yes | 77.84 | 4 → 4 | |
Cosubstrate pathways | |||||||
[AAO3] | AT2G27150 | A02NOA1 | GTD | Aab27016 | 77.67 | 2 → 2 | |
AAO4 | AT1G04580 | A02NOA1 | Aab24896 | Yes | 79.58 | 2 → 2 | |
APK1 | AT2G14750 | A10NOA2 | Aab32150 | Yes | 83.75 | 2 → 2 | |
APK2 | AT4G39940 | A10NOA2 | GTD | Aab17804 | Yes | 86.05 | 2 → 2 |
Side-chain elongation | |||||||
BCAT4 | AT3G19710 | A08N074 | Aab21007 | Yes | 75 | 6 → 6 | |
[BCAT7] | AT1G50090 | A08N074 | TD | Aab22548 | Yes | 76.9 | 6 → 6 |
IPMI1 | AT3G58990 | A11N226 | Aab13092 | Yes | 83 | 3 → 3 | |
[IPMI like] | AT2G43090 | A11N226 | TD | Aab19619 | Yes | 85.99 | 3 → 3 |
BCAT3 | AT3G49680 | A19N002 | Aab33782 | Yes | 76.02 | 6 → 6 | |
[BCAT5] | AT5G65780 | A19N002 | TD | Aab23605 | Yes | 75.3 | 6 → 6 |
BAT5 | AT4G12030 | A20N095 | Aab32285 | Yes | 76.21 | 2 → 2 | |
[BAT like] | AT4G22840 | A20N095 | Aab23321 | Yes | 91.82 | 2 → 2 | |
TF regulation | |||||||
OBP2 | AT1G07640 | A02N142 | Aab18330 | Yes | 80.28 | 2 → 2 | |
[OBP like] | AT2G28810 | A02N142 | Aab24559 | Yes | 70.03 | 2 → 2 | |
MYB122 | AT1G74080 | A05N185 | Aab14276 | Yes | 57.56 | 6 → 4 | |
MYB51 | AT1G18570 | A05N185 | Aab19683 | Yes | 59.89 | 6 → 4 | |
IQD1 | AT3G09710 | A14N046 | Aab18852 | Yes | 65.59 | 2 → 2 | |
[IQD2] | AT5G03040 | A14N046 | Aab18368 | Yes | 77.39 | 2 → 2 | |
MYB28 | AT5G61420 | A26N034 | Aab12163 | Yes | 67.39 | 6 → 4 | |
MYB29 | AT5G07690 | A26N034 | TD | Aab33585 | Yes | 65.13 | 6 → 4 |
36% TD (13/36) | 29% TD (10/35) | Ø 76.58 | |||||
14% GTD (5/36) | 14% GTD (5/35) |
aSquared brackets indicate ohnolog copies of GS biosynthetic genes without GO!-annotation to GS biosynthetic process.
bTD refers to members of TARs and GTD refers to a history of transposition in Arabidopsis.
cPredicted Aethionema CDS.
dChange of gene family locus count in Arabidospsis → Aethionema order.