Table 2.
Protein Name | AGIa | α-Block | AabIDb | Syntelog | % Identity | Lineage Specific? | Col-0 → Aabc |
---|---|---|---|---|---|---|---|
GS genes with retained α-ohnolog | |||||||
[AAO3] | AT2G27150 | A02NOA1 | Aab27016 | Yes | 77.67 | No | 2 → 2 |
CYP79C1 | AT1G79370 | A05N062 | Aab34143 | Yes | 76.8 | No | 8 → 9 |
APK2 | AT4G39940 | A10NOA2 | Aab17804 | Yes | 86.05 | No | 2 → 2 |
CYP79B2 | AT4G39950 | A10N257 | Aab17805 | Yes | 81.38 | No | 8 → 9 |
CYP79B3 | AT2G22330 | A10N257 | Aab19477 | Yes | 81.4 | No | 8 → 9 |
GS genes with tandem duplicate copy | |||||||
AOP1 | AT4G03070 | A01 | Aab37231 | Yes | 70.03 | No | 2 → 1 |
AOP3 | AT4G03050 | A01 | — | — | — | Arabidopsis | 2 → 1 |
CYP79F1 | AT1G16410 | A05 | Aab27579 | Yes | 72.79 | Aethionema | 8 → 9 |
CYP79C2 | AT1G58260 | A03 | Aab17711 | Yes | 71.85 | Aethionema | 8 → 9 |
A11 | Aab22600 | No | 61.8 | Aethionema | 8 → 9 | ||
CYP83A1 | AT4G13770 | A15 | Aab32506 | Yes | 69.67 | No | 2 → 3 |
— | Aab30975 | No | 82.8 | Aethionema | 2 → 3 | ||
CYP81F2 | AT5G57220 | A22 | — | — | — | Arabidopsis | 2 → 1 |
GS genes without α-ohnolog or tandem duplicate copy | |||||||
UGT74B1 | AT1G24100* | A05 | Aab07826 | Yes | 70.35 | No | 6 → 10 |
A05 | Aab07827 | Yes | 80.65 | Aethionema | 6 → 10 | ||
IMD3 | AT1G31180 | A06 | — | — | — | Arabidopsis | 2 → 1 |
CYP83B1 | AT4G31500 | A10 | Aab12019 | No | 92.73 | No | 2 → 3 |
GSL-OH | AT2G25450 | A10 | — | — | — | Arabidopsis | 1 → 0 |
IMD1 | AT5G14200 | A12 | Aab14760 | Yes | 89.5 | No | 2 → 1 |
CYP79A2 | AT5G05260* | A14 | Aab36760 | Yes | 73.37 | No | 8 → 9 |
CHY1 | AT5G65940* | A19 | Aab05851 | Yes | 80.75 | No | 2 → 2 |
FMO-GSOX-1 | AT1G65860* | A25 | Aab30109 | Yes (minimum) | 58.45 | No | 11 → 8 |
24% TD (4/17) | 18% TD (3/17) | Ø 76.78% | |||||
29% retained α-ohnolog (5/17) | 29% retained α-ohnolog (5/17) |
aAsterisks mark GTDs inferred by flanking TE-like sequences using GEVo.
bPredicted Aethionema CDS.
cChange of gene family locus count in Arabidospsis → Aethionema order.