Table 8.
Protein Namea,b | AGI | α-Blockc | AabIDd | Syntelog | % Identitye | Lineage Specific? | Col-0 → Aabf |
---|---|---|---|---|---|---|---|
Tandem duplicates of syntenic anchor genes retaining an At-α ohnolog | |||||||
UGT74C1 | AT2G31790 | A02N051 | Aab37175 | Yes | 79.44 | No | 6 → 10 |
Aab37178 | Yes | 82.05 | Aethionema | 6 → 10 | |||
Aab37179 | Yes | 77.63 | Aethionema | 6 → 10 | |||
Aab37180 | Yes | 78.95 | Aethionema | 6 → 10 | |||
UGT74D1_oa | AT2G31750 | A02N053 | Aab37181 | Yes | 78.33 | (no GS gene) | 6 → 10 |
[UGT-like] | AT1G05670 | A02N051 | Aab31930 | Yes | 81.11 | No | 6 → 10 |
UGT-like_oa | AT1G05675 | A02 | Aab31932 | Yes | 71.4 | (no GS gene) | 6 → 10 |
UGT74E2_oa | AT1G05680 | A02N053 | Aab31933 | Yes | 59.8 | (no GS gene) | 6 → 10 |
FMO-GSOX-2 | AT1G62540 | A03N117 | Aab10869 | Yes | 76.6 | No | 11 → 8 |
FMO-GSOX-3 | AT1G62560 | A03 | Aab10867 | Yes | 71.9 | No | 11 → 8 |
FMO-GSOX-4 | AT1G62570 | A03 | Aab10866 | Yes | 55.2 | No | 11 → 8 |
FMO-like_oa | AT1G62580 | A03 | — | — | — | (no GS gene) | 10 → 7 |
FMO-like_oa | AT1G62600 | A03 | — | — | — | (no GS gene) | 10 → 7 |
FMO-like_oa | AT1G62620 | A03 | — | — | — | (no GS gene) | 10 → 7 |
[FMO-like] | AT1G12130 | A03N117 | Aab13543 | Yes | 65.09 | No | 11 → 8 |
FMO-GSOX-5 | AT1G12140 | A03 | Aab13546 | Yes | 71.9 | No | 11 → 8 |
FMO-like_oa | AT1G12200 | A03 | Aab13549 | Yes | 66.66 | (no GS gene) | 10 → 7 |
CYP79F2 | AT1G16400 | A05N062 | — | — | — | Arabidopsis | 8 → 9 |
CYP79F1 | AT1G16410 | A05 | Aab27579 | Yes | 72.79 | Arabidopsis | 8 → 9 |
SOT16 | AT1G74100 | A05N186 | Aab14278 | Yes | 91.07 | No | 3 → 3 |
SOT18 | AT1G74090 | A05 | Aab14277 | Yes | 83.9 | No | 3 → 3 |
GSTU20 | AT1G78370 | A05 | Aab07000 | Yes | 67.29 | No | 5 → 6 |
GSTU23_oa | AT1G78320 | A05 | Aab06994 | Yes | 81.74 | (no GS gene) | 5 → 6 |
GSTU22_oa | AT1G78340 | A05 | Aab06997 | Yes | 71.1 | (no GS gene) | 5 → 6 |
GSTU21_oa | AT1G78360 | A05 | Aab06998 | Yes | 76.71 | (no GS gene) | 5 → 6 |
GSTU19_oa | AT1G78380 | A05N104 | Aab06999 | Yes | 83.41 | (no GS gene) | 5 → 6 |
[BCAT7] | AT1G50090 | A08N074 | Aab22548 | Yes | 69 | No | 6 → 6 |
BCAT-like_oa | AT1G50110 | A08 | Aab22550 | Yes | 78.12 | (no GS gene) | 6 → 6 |
[SUR-like] | AT4G28420 | A10N194 | Aab31155 | Yes | 47.42 | No | 3 → 2 |
A10 | Aab31154 | Yes | Aethionema | ||||
SUR-like_oa | AT4G28410 | A10 | Aab31153 | Yes | 63.96 | (no GS gene) | 3 → 2 |
GGP1 | AT4G30530 | A10N314 | Aab24374 | Yes | 87.6 | No | 5 → 5 |
GGP-like_oa | AT4G30540 | A10 | Aab24373 | Yes | 75 | (no GS gene) | 5 → 5 |
GGP3_oa | AT4G30550 | A10 | Aab24372 | Yes | 82 | (no GS gene) | 5 → 5 |
[GGP-like] | AT2G23960 | A10N314 | Aab11021 | Yes | 69.67 | No | 5 → 5 |
GGP-like _oa | AT2G23970 | A10 | Aab11018 | Yes | 83.6 | (no GS gene) | 5 → 5 |
[IPMI-like] | AT2G43090 | A11N226 | Aab19619 | Yes | 85.99 | No | 3 → 3 |
IPMI2 | AT2G43100 | A11 | Aab19630 | Yes | 78.71 | No | 3 → 3 |
[BCAT5] | AT5G65780 | A19N002 | Aab23605 | Yes | 75.3 | No | 6 → 6 |
LINC4_oa | AT5G65770 | A19 | Aab23607 | Yes | 70.08 | (no GS gene) | 6 → 6 |
MYB29 | AT5G07690 | A26N034 | Aab33585 | Yes | 65.13 | Arabidopsis | 6 → 4 |
MYB76 | AT5G07700 | A26 | — | — | — | Arabidopsis | 6 → 4 |
Tandem duplicates of genes inside the boundaries of α-blocks with nonretained At-αohnolog | |||||||
AOP1 | AT4G03070 | A01 | Aab37231 | Yes | 70.03 | Arabidopsis | 2 → 1 |
AOP3 | AT4G03050 | A01 | — | — | — | Arabidopsis | 2 → 1 |
GSTF10 | AT2G30870 | A02 | Aab28612 | Yes | 91.59 | No | 4 → 4 |
GSTF9_oa | AT2G30860 | A02 | Aab28613 | Yes | 89.76 | (no GS gene) | 4 → 4 |
CYP79C2 | AT1G58260 | A03 | Aab17711 | Yes | 71.85 | No | 8 → 9 |
CYP-like_oa | AT1G58265 | A03 | Aab17712 | Yes | 60.71 | (no GS gene) | 8 → 9 |
UGT74B1 | AT1G24100 | A05 | Aab07827 | Yes | 80.65 | Aethionema | 6 → 10 |
A05 | Aab07826 | Yes | 70.35 | Aethionema | 6 → 10 | ||
CYP81F2 | AT5G57220 | A22 | — | — | — | Arabidopsis | 2 → 1 |
CYP71B10 _oa | AT5G57260 | A22 | Aab25774 | Yes | 73.21 | (no GS gene) | 2 → 1 |
BZO1 | AT1G65880 | A25 | Aab31601 | Yes | 70.04 | No | 2 → 4 |
Aab31602 | Yes | 69.4 | Aethionema | 2 → 4 | |||
BZO-like_oa | AT1G65890 | A25 | Aab31603 | Yes | 68.85 | (no GS gene) | 2 → 4 |
Aab31604 | Yes | 67.83 | (no GS gene) | 2 → 4 | |||
Tandem duplicates of genes outside the boundaries of α-blocks | |||||||
MAM1 | AT5G23010 | — | Aab12229 | Yes | 72.31 | No | 2 → 4 |
Aab12230 | Yes | 71.5 | Aethionema | 2 → 4 | |||
MAM-L | AT5G23020 | — | Aab12225 | Yes | 70.67 | No | 2 → 4 |
Aab12226 | Yes | 68.36 | Aethionema | 2 → 4 | |||
AtGS genes: 45% TD (29/64) | AabGS genes: 46% TD (31/67) | Ø 73.43% | |||||
aSquared brackets indicate ohnolog copies of GS biosynthetic genes without GO! annotation to GS biosynthetic process.
bThe “_oa” suffix indicates tandem duplicate copies without GO! annotation to GS biosynthetic process. These genes have not been considered for the tandem duplicate count of GS loci in both organisms.
cUnderlined items refer to offspring of one pre-α TD event.
dPredicted Aethionema CDS.
eIn case of Aethionema-specific TAR expansion, the corresponding Arabidopsis sequence for identity comparison was determined based on both genomic location and homology criteria.
fChange of gene family locus count in Arabidospsis → Aethionema order.