Table 2.
Comparisons of homologues between C. moewusii and other four green algae with reference genome sequences by mapping, BlastN and BlastX
| Algal reference | Cre | ChlN | Coc | Vca |
|---|---|---|---|---|
| Reference Transcripts # |
17,114 |
55,307 |
65,067 |
15,285 |
| Refernce Ave Length (bp) |
3,117 |
1,370 |
1,475 |
1,817 |
|
Mapping | ||||
| Mapped Transcripts # |
680 |
162 |
144 |
304 |
| Mapped Ave Length (bp) |
957 |
759 |
773 |
818 |
| Percentage Mapped |
1.99 |
0.47 |
0.42 |
0.89 |
|
BlastN | ||||
| Transcript hit (E-value = 0) |
135 (126)* |
17 (17) |
15 (15) |
38 (38) |
| Transcript hit (E-value < =10-6) |
5,386 (3,886) |
2,767 (2,090) |
2,184 (1,712) |
3,749 (2,818) |
| Transcript hit (E-value < =10-3) |
14,106 (8,111) |
8,559 (4,797) |
4,855 (3,323) |
10,869 (6,098) |
|
BlastX | ||||
| Transcript hit (E-value = 0) |
972 (876) |
492 (466) |
942 (849) |
633 (591) |
| Transcript hit (E-value < =10-6) |
14,784 (7,974) |
10,948 (7,355) |
13,615 (7,053) |
10,646 (7,266) |
| Transcript hit (E-value < =10-3) | 19,992 (9,735) | 14,953 (8,945) | 17,960 (8232) | 12,956 (8181) |
*The number before and within brackets mean: the number of C. moewusii transcripts with Blast hits from reference alga and the number of reference transcripts hit by C. moewusii query transcripts. CreC. reinhardtii, ChlNC. variabillis N64A, CocC. subellipsoidea, and VcaV. carteri.