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| Strain | Description | Reference |
| Afs35 (FGSC A1159) | Wild type (akuA::loxP) | From FGSC |
| Af293 | Wild type | From FGSC |
| ΔnikA | nikA::HygBr | This study |
| Co-nikA | nikA::HygBr+nikA | This study |
| ΔsskA | sskA::HygBr | This study |
| ΔsakA | sakA::hph | This study |
| Δfos1 | fos1::HygBr | This study |
| ΔphkA | phkA::HygBr | This study |
| ΔphkB | phkB::HygBr | This study |
| Δfhk5 | fhk5::HygBr | This study |
| Δfhk6 | fhk6::HygBr | This study |
