Table 1. Genes and gene candidates identified in the NAISTrap project.
Category | No. | Percentage |
---|---|---|
NR genes | 182 | 39.0 |
ESTs | 49 | 10.5 |
Reverse strands of known genes | 23 | 4.9 |
Repetitive sequences | 38 | 8.1 |
Unknown sequences | 175 | 37.5 |
Total | 467 | 100.0 |
In the NAISTrap project, discrete 3′ RACE bands were recovered from 75% of the total cellular RNA samples extracted from the ES clones that had been picked up after the RET vector introduction and G418 selection. Of the PCR products obtained, 69% produced “high-quality” DNA sequences. Homology searches were performed by the blastn algorithm with genome information from the public databases, including GenBank (http://www.ncbi.nlm.nih.gov) and Ensembl (http://www.ensembl.org). Identity or similarity extending more than ≈ 100 bp with the probability E value of 10-20 or less was considered to be significant homology. The results of initial 467 NAISTrap sequences are shown.