Table 2.
Strains (RASANs) tested in the study
| Strain (abbreviation) | n |
NHap |
HapD (SD) |
NPS |
π (SD) |
k |
|||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| HVR1 | W | HVR1 | W | HVR1 | W | HVR1 | W | HVR1 | W | ||
|
Kahlila (K) |
44 |
22 |
26 |
0.94(0.022) |
0.95(0.022) |
41 |
61 |
0.023(0.0006) |
0.0149(0.0005) |
9.9 |
14.2 |
|
Hamadania (H) |
61 |
12 |
14 |
0.87(0.019) |
0.88(0.02) |
32 |
52 |
0.019(0.0009) |
0.0148(0.0006) |
8.4 |
14.1 |
|
Hadbaa (HD) |
7 |
3 |
3 |
0.76(0.115) |
0.76(0.115) |
17 |
24 |
0.019(0.003) |
0.0125(0.002) |
8.5 |
12.0 |
|
Dahmaa (D) |
7 |
2 |
2 |
0.57(0.119) |
0.57(0.119) |
11 |
19 |
0.014 (.0029) |
0.0113(0.0023) |
6.3 |
10.8 |
|
Saklawia (S) |
43 |
14 |
15 |
0.92(0.019) |
0.92(0.02) |
33 |
48 |
0.019(0.001) |
0.0127(0.0006) |
8.4 |
12.1 |
|
Abiah (A) |
24 |
10 |
10 |
0.85(0.053) |
0.85(0.053) |
28 |
39 |
0.019(0.0015) |
0.012(0.001) |
8.7 |
11.7 |
|
Shweemat (SH) |
5 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| all | 191 | 44 | 55 | 0.96(0.004) | 0.97(0.004) | 52 | 81 | 0.0218(0.0006) | 0.0151(0.0004) | 9.9 | 14.4 |
n number of individuals in each strain. NHap the number of haplotypes resulted in each strain. HD Haplotype diversity with its standard deviation. NPS the number of polymorphic sites. π Nucleotide diversity with its standard deviation. k Average number of nucleotide differences. HVR1 part of the upstream D-loop (450 sites). W the whole D-loop (951 sites).