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. 2013 Sep 11;10:281. doi: 10.1186/1743-422X-10-281

Table 2.

Nucleotide and amino acid identities of the polyprotein gene sequences

Strain Nucleotide identity (%)
CHN/SC/31 CHN/SC/32 CHN/SC/33 CHN/SC/34 CHN/SC/35 S-1-HUN Y-1-CHI SH-W-CHN WUH1 WB-1-HUN HNXX-4 CH/HZ/2011 XX
CHN/SC/31
 —
 98.3
 97.5
 85.1
 86.7
 87.8
 87.8
 84.4
 86.1
 84.7
 85.2
 82.8
 84.0
CHN/SC/32
 98.7
 —
 98.8
 85.3
 86.8
 87.4
 87.3
 84.4
 86.3
 84.7
 85.1
 82.1
 84.0
CHN/SC/33
 98.2
 98.7
 —
 85.7
 87.3
 87.2
 87.6
 84.4
 86.5
 84.8
 85.3
 82.5
 84.4
CHN/SC/34
 91.9
 91.7
 92.4
 —
 84.5
 84.5
 85.4
 87.9
 84.5
 83.6
 88.0
 83.4
 86.9
CHN/SC/35
 95.7
 95.2
 95.5
 90.7
 —
 87.2
 87.9
 84.5
 86.3
 85.1
 83.4
 82.2
 83.7
S-1-HUN
 95.7
 95.7
 95.5
 91.4
 95.5
 —
 86.0
 84.3
 86.9
 86.6
 83.4
 84.4
 84.8
Y-1-CHI
 94.2
 94.2
 94.2
 92.2
 95.7
 94.9
 —
 86.2
 87.3
 84.4
 84.8
 83.3
 84.4
SH-W-CHN
 89.9
 89.6
 89.9
 93.9
 88.9
 88.6
 89.6
 —
 84.5
 82.8
 86.5
 84.0
 86.4
WUH1
 95.7
 95.5
 95.2
 91.4
 93.7
 96.0
 93.9
 89.1
 —
 85.1
 84.2
 83.4
 85.5
WB-1-HUN
 92.4
 92.2
 91.9
 89.9
 90.7
 93.4
 91.9
 87.1
 93.7
 —
 83.0
 81.1
 84.5
HNXX-4
 91.2
 90.9
 91.4
 96.5
 89.9
 90.9
 91.4
 92.7
 90.7
 90.4
 —
 83.5
 87.7
CH/HZ/2011
 90.9
 90.7
 91.2
 92.7
 90.4
 90.7
 91.9
 90.9
 90.9
 89.1
 91.7
 —
 83.9
XX
 90.4
 90.2
 90.4
 94.4
 88.9
 90.2
 89.9
 91.9
 91.7
 90.2
 93.9
 90.9
 —
Amino identity (%)

The reference porcine kobuvirus used in the comparison and their accession numbers are as follows: S-1-HUN (EU787450), Y-1-CHI (GU292559), SH-W-CHN (JN630514), WUH1 (JQ692069), WB-1-HUN (JX177612), HNXX-4 (JX401523), CH/HZ/2011 (JX827598), XX (KC204684).